david-a-parry/cnv-seq-wrapper

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Created almost 10 years ago
Updated almost 10 years ago

david-a-parry/cnv-seq-wrapper

david-a-parry

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Wrapper scripts for CNV-seq

autoprimer3

A program to automatically generate primer designs to genes and genomic coordinates using primer3

vase

Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.

vcfhacks

simple to use commandline programs for VCF filtering and manipulation

cnvnatorWrapper

Simple wrapper script for running cnvnator automatically on multiple bam files.

CrossMap

Fork of CrossMap (http://crossmap.sourceforge.net/) with some input/output niceties

MutationMapper

Predict functional consequences of mutations identified from sanger sequencing.

eddie_genomestrip_wrapper

Scripts and instructions for getting GenomeSTRiP to run on EDDIE3 at UoE

index_bam_by_read_id

python module for sorting, indexing and retrieving reads from BAMs using read IDs

scoreSpliceSites

columnSelector

Outputs named columns from a text file on the commandline