datajoint/workflow-miniscope

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Jupyter Notebook
License
MIT License
Created over 3 years ago
Updated over 1 year ago

datajoint/workflow-miniscope

datajoint

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Example DataJoint workflow for miniscope calcium imaging analysis with CaImAn

datajoint-python

Relational data pipelines for the science lab

datajoint-matlab

Relational data pipelines for the science lab

mysql-docker

Docker image for MySQL configured to work with DataJoint

element-deeplabcut

DataJoint Element for behavioral analysis with DeepLabCut

Jupyter Notebook

datajoint-labbook

DataJoint LabBook is a graphical user interface built using React to facilitate working with DataJoint computational pipelines.

datajoint-tutorials

Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples

Jupyter Notebook

element-calcium-imaging

DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT

Jupyter Notebook

workflow-array-ephys

Example DataJoint workflow for Neuropixels analysis with Kilosort

Jupyter Notebook

workflow-calcium-imaging

Example DataJoint workflow for multi-photon calcium imaging analysis with CaImAn and Suite2p

Jupyter Notebook

mym

MySQL API for MATLAB with support for BLOB objects

sci-viz

Generic visualization framework for building dashboarding capabilities for DataJoint pipelines.

element-array-ephys

DataJoint Element for Neuropixels analysis with Kilosort

datajoint-docs

Landing Page for DataJoint Documentation

djlabhub-docker

A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.

element-interface

Common functions for the DataJoint Elements

datajoint-dashboard

Developing tool to build a Plotly Dash app for a DataJoint pipeline

datajoint-core

Common DataJoint OSS framework

compress-multiphoton

Compression for multiphoton calcium imaging movies and stacks

Jupyter Notebook

element-facemap

DataJoint Element for behavioral analysis with Facemap

Jupyter Notebook

element-moseq

DataJoint Element for Motion Sequencing with Keypoint-MoSeq

Jupyter Notebook

datajoint-elements

DataJoint Elements is a collection of curated computational workflows for neurophysiology experiments.

pharus

Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.

datajoint-docs-original

wiki

This is a comprehensive wiki for the DataJoint framework.

element-session

DataJoint Element for session management

element-lab

DataJoint Element for lab management

dj-python-101

Reference tutorial notebooks for DataJoint (under active development - October 2019)

Jupyter Notebook

element-miniscope

DataJoint Element for miniscope calcium imaging analysis with CaImAn

Jupyter Notebook

element-animal

DataJoint Element for animal management

point-cloud-registration

Point Cloud Registration

Jupyter Notebook

datajoint-github-page

Organization Page for DataJoint

ipython-notebook-tutorial

Jupyter Notebook

neuronex_workshop_2018

Workshop material from DataJoint NeuroNex Workshop 2018

Jupyter Notebook

sciops-summit-2024

DataJoint SciOps Summit - Schedule

workflow-optogenetics

Example DataJoint workflow for optogenetics research

Jupyter Notebook

datajoint-jupyter

jupyter integration for datajoint

Jupyter Notebook

GHToolbox

`ghtb` provides a simple way to manage toolbox installation of open-source MATLAB Community Toolboxes linked to GitHub (via Releases).

pydev-docker

Docker image for Python based scientific computing environment.

datajoint_connection_hub-python

This is an official DataJoint Python plugin for connection to DJNeuro's hosted instances.

otumat

A suite of maintainer tools and utilities for pip packages.