datacarpentry/python-ecology-lesson

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Data Analysis and Visualization in Python for Ecologists

Data Carpentry Python Lessons with Ecological Data

This repository contains the Data Carpentry Python material based on ecological data. Please see our contribution guidelines for information on how to contribute updates, bug fixes, or other corrections.

Contributing

We welcome all contributions to improve the lesson! Maintainers will do their best to help you if you have any questions, concerns, or experience any difficulties along the way.

We'd like to ask you to familiarize yourself with our Contribution Guide and have a look at the more detailed guidelines on proper formatting, ways to render the lesson locally, and even how to write new episodes.

Please see the current list of issues for ideas for contributing to this repository. For making your contribution, we use the GitHub flow, which is nicely explained in the chapter Contributing to a Project in Pro Git by Scott Chacon. Look for the tag . This indicates that the maintainers will welcome a pull request fixing this issue.

Maintainer(s)

Current maintainers of this lesson are

Authors

A list of contributors to the lesson can be found in AUTHORS

Citation

To cite this lesson, please consult with CITATION

R-ecology-lesson

Data Analysis and Visualization in R for Ecologists

archive-datacarpentry

Data Carpentry workshop materials

r-raster-vector-geospatial

Introduction to Geospatial Raster and Vector Data with R

r-socialsci

R for Social Scientists

datacarpentry.github.io

Data Carpentry website

image-processing

Image Processing with Python

semester-biology

Forkable teaching materials for course on working with data in R

wrangling-genomics

Data Wrangling and Processing for Genomics

shell-genomics

Introduction to the Command Line for Genomics

r-intro-geospatial

Introduction to R for Geospatial Data

sql-ecology-lesson

Data Management with SQL for Ecologists

genomics-workshop

Genomics Workshop Overview

R-genomics

Lesson on data analysis and visualization in R for genomics

rr-organization1

The Organization lesson for the Reproducible Science Curriculum

spreadsheet-ecology-lesson

Data Organization in Spreadsheets for Ecologists

organization-geospatial

Introduction to Geospatial Concepts

geospatial-workshop

Geospatial Workshop Overview

python-socialsci

Data Analysis and Visualization with Python for Social Scientists

astronomy-python

Jupyter Notebook

genomics-r-intro

Intro to R and RStudio for Genomics

stata-economics

Economics Lesson with Stata

OpenRefine-ecology-lesson

Data Cleaning with OpenRefine for Ecologists

openrefine-socialsci

OpenRefine for Social Science Data

organization-genomics

Project Organization and Management for Genomics

spreadsheets-socialsci

Data Organization in Spreadsheets for Social Scientists

python-neuroimaging-lesson

Lessons on neuroimaging analysis with Python

Jupyter Notebook

ecology-workshop

Ecology Workshop Overview

cloud-genomics

Introduction to Cloud Computing for Genomics

organization-geospatial-DEPRECATED

socialsci-workshop

Social Science Workshop Overview

rr-automation

Resources for automation tutorials

sql-socialsci

Data Management with SQL for Social Scientists

rnaseq-data-analysis-ARCHIVED

python-ecology-lesson-es

Análisis y visualización de datos usando Python

Jupyter Notebook

rr-intro

Introduction materials for Reproducible Research Curriculum

textmining-socialsci-ARCHIVED

Data Carpentry lessons on text mining for the social sciences

DEPRECATED-cloud-genomics-orig

Deprecated - this repository is an outdated fork from datacarpentry/cloud-genomics

rr-literate-programming

Repository for lesson materials on Literate Programming

rr-version-control

Reproducible Science Curriculum Lesson for Version Control

curriculum-advisors

Meeting notes and other documents related to curriculum advisory committees for Data Carpentry lessons.

lesson-template-ARCHIVED

This is a repository that is a template for lessons

NEON-R-Remote-Sensing

Advanced remote sensing lessons developed in October 2015 at the NEON / Data Carpentry Spatio-temporal data lesson hackathon. These lessons are under development.

R-dplyr-ecology-archived

Lesson on manipulating data frames using dplyr and the ecology dataset

NEON-R-Spatial-Vector-deprecated

Lessons that teach how to 1) open shapefiles in R, 2) use shapefiles to extract values from rasters in R NOTE: the published version of these lessons can be found here: http://neondataskills.org/tutorial-series/vector-data-series/

R-tidy-data-LoR-ARCHIVED

hpc-carpentry

Information on an 'HPC' Carpentry that includes information about lesson in high throughput and high performance computing

NEON-R-Tabular-Time-Series

These data tutorials complement the spatio-temporal lessons (raster and vector) in R lessons. These lessons are close to being published on the neondataskills.org website.

rr-workshop

Workshop and lesson templates

DEPRECATED-knowyourdata-genomics

DEPRECATED: This repository is now frozen - For the most recent version of these materials, see: https://github.com/data-lessons/introduction-genomics/blob/gh-pages/01-intro-to-dataset.md

shell-economics

Introduction to the Command Line for Economics

presentations

organization-reproduceR-lesson

Materials for the topic 'organization' in the Reproducible Research Curriculum

rr-publication

Reproducible Science Curriculum Lesson for Publication

shell-ecology-ARCHIVED

This repository contains Data Carpentry lessons on using the shell data wrangling in ecology

reproduceR-workshop

Overview of the Reproducible Research in R workshop

2014-09-29-iDigBio

Data Carpentry repository for iDigBio workshop Sept 29-30

2015-08-24-Sloan-Kettering

Data Carpentry workshop at Sloan-Kettering

2015-08-24-ISU

Genomics Data Carpentry workshop at ISU

2015-02-09-ucdavis

UC Davis Data Carpentry workshop

genomics-hackathon

Materials and logistical information for the Genomics and Assessment Hackathon March 23-25

DEPRECATED-introduction-genomics

This lesson is deprecated. See https://github.com/datacarpentry/organization-genomics

2015-06-30-FederalReserveBoard

Data Carpentry workshop at the Federal Reserve Board

workshop-template-ARCHIVED

DEPRECATED: please use https://github.com/swcarpentry/workshop-template instead

DEPRECATED-R-ggplot2-ecology

DEPRECATED: This repository is now frozen - please see individual lesson repositories.

2016-05-26-NIH

2016-05-29-PyCon

Data Carpentry tutorial at PyCon: An Introduction to Python for Data Analysis and Visualization

logos

Logos for the Data Carpentry project

genomics-infrastructure

lesson-release

Information for lesson releases

2015-05-29-great-plains

scripting-ecology

The Data Carpentry lessons on scripting for ecologists

2015-05-30-HASTAC

Data Carpentry workshop at HASTAC

2014-07-24-beacon

Data Carpentry workshop July 24-25 BEACON

dc_zurich

Repo for DC workshop at the University of Zurich

governance

Repository for minutes and notes regarding the Data Carpentry Governance Committee

2015-04-23-stanford

Stanford Data Carpentry Workshop

documents

Data Carpentry documents

2015-05-03-NDIC

Data Carpentry workshop at 2015 National Data Integrity Conference at CSU