Discover dariober/Illumina-450K-oxBS Open Source project

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Created about 10 years ago
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Code accompanying the manuscript "Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array)"

ASCIIGenome

Text Only Genome Viewer!

Java

203

cnv_facets

Somatic copy variant caller (CNV) for next generation sequencing

bioinformatics-cafe

Unsorted scripts for bioinformatics

Python

SICERpy

Python wrapper around the popular ChIP-Seq peak caller SICER

Python

sympy-books

Maths textbook exercises implemented in SymPy

TeX

fxstat

Fast and easy stats for FASTA and FASTQ files

genomeGraphs

Command line program to visualize genomic data

Python

Java-cafe

A variety of bioinformatics programs written in Java

Java

SequenceMatcher

Match query sequences against reference sequences

Java

quadratic-programming-deconvolution

A tutorial on quadratic programming for deconvolution of mixed cell populations using R

TeX

test-setup-travis

Sandbox to experiment set up scripts with Travis CI

Shell

rebuilt-enhanced-methyl-seq

Code supporting the article "Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments", McInroy et al., 2016

reference-code

Code used in published material like articles or theses.

dariober/Illumina-450K-oxBS

dariober

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