dantaki/pyfreq

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Python
Created almost 7 years ago
Updated almost 7 years ago

dantaki/pyfreq

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Cython optimized allele frequency calculation for VCFs

vapeplot

matplotlib extension for vaporwave aesthetics

DeepBake

Baking Machine Learning into Great British Bake Off

Jupyter Notebook

SV2

Support Vector Structural Variation Genotyper

CNVplot

Plot CNV data with a genome viewer in R

mMBA

Micro MBA Course

videos

supplementary files for tutorial videos

gtCNV

Genotype Copy Nuber Variation with Machine Learning.

Marcus-Aurelius-Bot

Tweeting Meditations to World Leaders

fastq2fasta

Convert FASTQ to FASTA with C++

svmerge

Merge SVs according to reciprocal overlap

SVanGogh

snakemake_tutorial

Notes on Snakemake

Local-De-Novo-Assembly-with-Long-Reads

A quick tutorial on local de novo assembly of long reads

chromCov

Calculate Chromosome Coverage with C++

tensorflow_tutorial

Tutorials for TensorFlow

Jupyter Notebook

presentations

pipeline

Get your pipe on

somatic_sim

Pipeline for simulating somatic variants with Pysim

stogie

Validate SVs with CIGAR Strings

infractus

Validate deletions, tandem duplications, and inversions with single-reads

cookbook

Recipes for Computational Biology

Jupyter Notebook

pyslurm

construct SLURM job submission scripts

pydnm

python clone of ForestDNM

COVID19-Notebooks

Jupyter Notebooks of COVID19 Data

Jupyter Notebook

plink_tut

Plink Crash Course