danro9685/SparseSignatures danro9685/SparseSignatures

  • Stars
    star
    10
  • Rank 1,800,189 (Top 36 %)
  • Language
    R
  • License
    Apache License 2.0
  • Created about 7 years ago
  • Updated 11 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
danro9685/SparseSignatures
github

danro9685

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009119

More Repositories

1

CIMLR

Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s41467-018-06921-8
MATLAB
16
star
2

ASCETIC

ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3
R
8
star
3

OncoScore

OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The manuscript of the method is published on Scientific Reports and available at http://www.nature.com/articles/srep46290. The tool can also be used as a Web interface at https://www.galseq.com/next-generation-sequencing/oncoscore-software/.
R
5
star