danro9685/ASCETIC danro9685/ASCETIC

  • Stars
    star
    8
  • Rank 2,090,845 (Top 42 %)
  • Language
    R
  • License
    Apache License 2.0
  • Created about 2 years ago
  • Updated 11 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
danro9685/ASCETIC
github

danro9685

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal patterns involving alternations in driver genes from cancer genomics data. Manuscript published at: https://www.nature.com/articles/s41467-023-41670-3

More Repositories

1

CIMLR

Implementations in both Matlab and R of the CIMLR method. The manuscript of the method is available at: https://www.nature.com/articles/s41467-018-06921-8
MATLAB
16
star
2

SparseSignatures

Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009119
R
10
star
3

OncoScore

OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The manuscript of the method is published on Scientific Reports and available at http://www.nature.com/articles/srep46290. The tool can also be used as a Web interface at https://www.galseq.com/next-generation-sequencing/oncoscore-software/.
R
5
star