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annoFuse
Filter and prioritize fusion callsbixtools
🐳 Dockerfiles for bioinformatics toolsd3b-analysis-toolkit
CNS Tumor Subtyping Project. Currently in beta development!PBTA-ALT-analysis
Repository for CBTTC-ALT project with Kristina Coled3b-utils-python
Collection of reusable python utilitiespeds-brain-auto-seg-public
D3b PedsBrainAutoSeg tool (public realease)medullo-classifier-package
R package for Medulloblastoma subtype classificationcelllines-profiling-analysis
Stemness analysis in HGG Suspension vs Adhesion cell lineshope-cohort-analysis
Analysis for HOPE cohortd3b-redcap-api-python
⛑ REDCap API interface in Pythontiru-preproc-mri
Preprocessing code for MR images (uses CaPTk/BRATS pipeline).d3b-research-workflows
ticket-tracker-OPC
A repo to generate and track tickets for ped OTOMPARE
OMics PAtient REportimage-deid-etl
A WIP tool to assist with reading DICOM images from Orthanc, conversion to anonymized NIfTI images, and uploading to Flywheel.d3b-adapt-query-library
Storage for ADAPT SQL queriespeds-brain-seg-pipeline-public
Preprocessing and automatic tumor segmentation for pediatric brain tumor subjectsd3b-cds-manifest-prep
scripts to prep manifests for cdsd3b-python-template
Template Python Repo for D3B ProjectsOpenPedCan-manuscript
The manuscript repository for the Pediatric Open Targets Projectpbta-splicing
Splicing analysis across the PBTApbta-ancestry
medullo-classifier-shinyapp
Shiny app for medullo classifier R packagePBTA-miRNA-analysis
Analysis of PBTA miRNA datad3b-publication-code
Central repository to organize publication-related codetumor-loh-app-dev
Development repo for LOHdiseaseXpress-pipeline
pipeline to process diseaseXpress datasetsD3b-autoPVS1
This is a modiifed port of the original https://github.com/JiguangPeng/autopvs1, branched from commit `7fb1be97667e5ef576f81bf2fabbddcf9a4c7594`. It was re-worked in order to work with Kids First germline annotation outputs.pediatric-auto-defacer-public
Release of trained pediatric defacing tool for MRI filespeds-brain-tumor-preproc
Docker for pre-processing moduleLove Open Source and this site? Check out how you can help us