cortex-lab/spikes

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MATLAB
Created over 8 years ago
Updated 10 months ago

cortex-lab/spikes

cortex-lab

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cortex lab code for electrophysiology

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

KiloSort

GPU code for spike sorting

allenCCF

Tools to work with Allen Inst CCF data in matlab

Suite2P

Tools for processing 2P recordings

neuropixels

Information about Neuropixels electrode arrays

alyx

Database for experimental neuroscience laboratories

Rigbox

A MATLAB toolbox for running behavioral neuroscience experiments and managing data

sortingQuality

Functions to assess quality of spike sorting results

widefield

Image processing and tools for widefield imaging

MATLAB-tools

A collection of useful MATLAB libraries

phylib

Lightweight electrophysiological data analysis library

npytools

[WIP] Command-line utilities to deal with NPY array files

Transcriptomics

MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools

wheelAnalysis

LabCI

Automation server for MATLAB & Python continuous integration, written in Node.js

PinkRigs

Shared code for processing data on the pink rigs

psychofit

A module for fitting 2AFC psychometric data

Jupyter Notebook

alyx-matlab

Some MATLAB functions for easier interfacing with an Alyx database

alyx-registrator

groundTruth

alf2neuroscope

Converts ALF format to be read in neuroscope

phy-plugins

ALF