Discover cortex-lab/Transcriptomics Open Source project

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MATLAB
License
GNU General Publi...
Created over 7 years ago
Updated over 1 year ago

cortex-lab

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MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

Python

307

KiloSort

GPU code for spike sorting

MATLAB

175

allenCCF

Tools to work with Allen Inst CCF data in matlab

MATLAB

122

Suite2P

Tools for processing 2P recordings

MATLAB

122

neuropixels

Information about Neuropixels electrode arrays

MATLAB

spikes

cortex lab code for electrophysiology

MATLAB

alyx

Database for experimental neuroscience laboratories

Python

Rigbox

A MATLAB toolbox for running behavioral neuroscience experiments and managing data

HTML

sortingQuality

Functions to assess quality of spike sorting results

MATLAB

widefield

Image processing and tools for widefield imaging

MATLAB

MATLAB-tools

A collection of useful MATLAB libraries

MATLAB

phylib

Lightweight electrophysiological data analysis library

Python

npytools

[WIP] Command-line utilities to deal with NPY array files

Python

wheelAnalysis

MATLAB

LabCI

Automation server for MATLAB & Python continuous integration, written in Node.js

JavaScript

PinkRigs

Shared code for processing data on the pink rigs

Python

psychofit

A module for fitting 2AFC psychometric data

Jupyter Notebook

alyx-matlab

Some MATLAB functions for easier interfacing with an Alyx database

MATLAB

alyx-registrator

groundTruth

first commit

MATLAB

alf2neuroscope

Converts ALF format to be read in neuroscope

Python

phy-plugins

ALF

cortex-lab/Transcriptomics

cortex-lab

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