constantAmateur/ambientRNA_paper

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Created almost 6 years ago
Updated about 4 years ago

constantAmateur/ambientRNA_paper

constantAmateur

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Code necessary to reproduce results of ambient RNA (SoupX) paper.

SoupX

R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

scKidneyTumors

Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"

cellSignalAnalysis

Identify major cellular signals in bulk transcriptomes

MCVR

Implementation of molecular cross validation technique to determine ideal number of PCs for scRNA-seq in R

WebGlacier

A basic web interface to manage your Amazon Glacier account

alleleIntegrator

R package to generate allele specific counts for scRNA data and use it to identify cancer cells

markdown2Mathjax

A library to allow the use of markdown and mathjax at the same time, utilizing the markdown2 python library.

inactiveXX

Detect X-inactivation status in single cell transcriptomes

MYRtsne

A modification of Rtsne to output some extra tSNE properties

gadget2-AccretionDiscs

A modified version of the gadget2 SPH code updated for use on accretion discs.

dediffPaperCode

Code needed to reproduce paper "Transcriptional signals of transformation in human cancer"

scihtmlatex

Converts html to latex for use with sciteit.com. Apapted from this project http://directory.fsf.org/wiki/HTMLatex

myfig

Easily publish figures to your private web server

XiPaperCode

Code necessary to create X-inactivation paper