const-ae/proDD

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Created about 6 years ago
Updated almost 5 years ago

const-ae/proDD

const-ae

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Differential Detection for Label-free (LFQ) Mass Spec Data

ggsignif

Easily add significance brackets to your ggplots

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

lemur

Latent Embedding Multivariate Regression

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

transformGamPoi-Paper

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

mixdir

Cluster high dimensional categorical datasets

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

Jupyter Notebook

Neural_Network_DNA_Demo

Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction

Jupyter Notebook

einsum

Einstein Summation for Arrays in R

CoefExplainer

Understand How to Interpret the Coefficients of a Categorical Linear Model

motif_plotter

A simple tool to create DNA motif plots based directly on matplotlib to enable construction of complex plots

Jupyter Notebook

CoronaDensity

ggquadrilateral

A quadrilateral geom for ggplot2

HighlyReplicatedRNASeq

Collection of Bulk RNA-Seq Experiments With Many Replicates

ggplot2_basics_to_extensions

Material from my talk "ggplot2: whistlestop tour from basics to extensions" at the Oxford R User group meetup.

gggroupedscale

Grouped Discrete Scale for 'ggplot2'

Multi-omics-Data-Integration-course

Temporary Repository for the EMBO 2024 Multi-Omics course

kmeansPoi

R package for K-means clustering of Counts

SkiingInSingapore

My solution for the coding challenge published by RedMart.

transformGamPoi-ShinyApp

Source code for the Shiny App of Comparison of Transformations for Single-Cell RNA-Seq Data

ggbezier

Bezier curves for 'ggplot2'

MyWorkflowManager

This is a simple self-written R workflow manager for slurm systems that I use to automate the submission of jobs

glmGamPoi-Paper