Discover const-ae/motif_plotter Open Source project

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Created almost 8 years ago
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const-ae

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A simple tool to create DNA motif plots based directly on matplotlib to enable construction of complex plots

ggsignif

Easily add significance brackets to your ggplots

574

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

331

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

102

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

102

lemur

Latent Embedding Multivariate Regression

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

transformGamPoi-Paper

HTML

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

mixdir

Cluster high dimensional categorical datasets

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

Jupyter Notebook

Neural_Network_DNA_Demo

Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction

Jupyter Notebook

einsum

Einstein Summation for Arrays in R

CoefExplainer

Understand How to Interpret the Coefficients of a Categorical Linear Model

CoronaDensity

HTML

ggquadrilateral

A quadrilateral geom for ggplot2

HighlyReplicatedRNASeq

Collection of Bulk RNA-Seq Experiments With Many Replicates

ggplot2_basics_to_extensions

Material from my talk "ggplot2: whistlestop tour from basics to extensions" at the Oxford R User group meetup.

HTML

gggroupedscale

Grouped Discrete Scale for 'ggplot2'

Multi-omics-Data-Integration-course

Temporary Repository for the EMBO 2024 Multi-Omics course

HTML

kmeansPoi

R package for K-means clustering of Counts

C++

SkiingInSingapore

My solution for the coding challenge published by RedMart.

Scala

proDD

Differential Detection for Label-free (LFQ) Mass Spec Data

transformGamPoi-ShinyApp

Source code for the Shiny App of Comparison of Transformations for Single-Cell RNA-Seq Data

ggbezier

Bezier curves for 'ggplot2'

MyWorkflowManager

This is a simple self-written R workflow manager for slurm systems that I use to automate the submission of jobs

glmGamPoi-Paper

HTML

const-ae/motif_plotter

const-ae

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