const-ae/gggroupedscale

This repository has been archived on 11/Apr/2023
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Created almost 3 years ago
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const-ae/gggroupedscale

const-ae

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Grouped Discrete Scale for 'ggplot2'

ggsignif

Easily add significance brackets to your ggplots

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

lemur

Latent Embedding Multivariate Regression

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

transformGamPoi-Paper

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

mixdir

Cluster high dimensional categorical datasets

proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

Neural_Network_DNA_Demo

Jupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction

Jupyter Notebook

einsum

Einstein Summation for Arrays in R

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

CoefExplainer

Understand How to Interpret the Coefficients of a Categorical Linear Model

motif_plotter

A simple tool to create DNA motif plots based directly on matplotlib to enable construction of complex plots

Jupyter Notebook

CoronaDensity

HighlyReplicatedRNASeq

Collection of Bulk RNA-Seq Experiments With Many Replicates

ggplot2_basics_to_extensions

Material from my talk "ggplot2: whistlestop tour from basics to extensions" at the Oxford R User group meetup.

ggquadrilateral

A quadrilateral geom for ggplot2

Multi-omics-Data-Integration-course

Temporary Repository for the EMBO 2024 Multi-Omics course

kmeansPoi

R package for K-means clustering of Counts

proDD

Differential Detection for Label-free (LFQ) Mass Spec Data

SkiingInSingapore

My solution for the coding challenge published by RedMart.

transformGamPoi-ShinyApp

Source code for the Shiny App of Comparison of Transformations for Single-Cell RNA-Seq Data

glmGamPoi-Paper