compbiomed/genome-reference-scripts

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Created about 4 years ago
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compbiomed/genome-reference-scripts

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Scripts for creating genome references (FASTA, STAR, etc.)

singleCellTK

Interactively analyze single cell genomic data

celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

animalcules

R shiny app for interactive microbiome analysis

enrichR

A hacky little interface to call the Enrichr functional enrichment tool from R.

MetaScope

An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)

TBSignatureProfiler

Profile RNA-seq data using published TB gene signatures

RNA_Seq

Nextflow pipeline for preprocessing RNA sequencing data.

BatchQC

Batch Effects Quality Control Software

ASSIGN

Adaptive Signature Selection and InteGratioN

animalcules-docs

basespace-cli-scripts

Bash wrapper scripts for working with the BaseSpace command-line interface (CLI)

beatmap

This heatmap *beats* the one you're using by adding comfortably spaced color bars and a color key.

scruff

Single Cell RNA-seq UMI Filtering Facilitator

curatedTBData

Curation of existing TB gene expression datasets