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STRdust
GeneVar
Sniphles
Sniphles is a read-based phasing approach for phased variant calling of structural variants.nibSV
Disease_subsetting
Colorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysisGeneVar2
SpikeVarTykeVar
omics_clinical_reporting
Clinical_Report_Design_for_omics_integrationkvar
PhytoKmerCNV
clinical_SVs
Clinically reportable structural variant callsPRS_reporting
Clinical Reporting of Polygenic Risk ScoresSVHack_Mendelian
Viewing_expressed_variants
Disease_Subtyping_2022
INSeption
snpReportR
Develop a tool to facilitate genetic reporting of expressed variantsCNV2SV
RPG_Pikachu
CleanSV
omics_to_omop
This project will describe how to pass a clinical report format to omop and import data from omop to that reportBiobank_notebooks
Notebooks for working with Biobank level dataRNAseq_Dashboard
A dashboard for comparison of RNAseq approachescoronasv
swagg
SVeedy
Genevar22
cov2db
cov2db repo provides necessary scripts for building a database of low frequency variantsCRC-Dashboard
vcfs2kgs
GrOMOP
Genome Graphs into OMOPOMICsDifferential_Expression_and_Variant_Association
aka Environmental effects on risk variantsgenome_and_knowledge_graphs
Genome and Knowledge Graph TheorykTom
virussusceptibility
graphbasedtuning
SVHack_metagenomics
Everything is bigger in Texas: Pan-Structural Variation hackathon in the Cloud!isocomp
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseqkgbasedvalidation
SVHack_Pangenomics
SVHack_assemblyvmapping
starfishDiscovery
Data_Integration_CoVID
Omopomics-style data integration for HLA, RNAseq and virus sequencesThe_X_team
Assembly based validation tool.NIST-GREX
beautifulsoup
Web scraping and yes, actual soup recipestandemrepeats
Tandem Repeats Team -- 2024 SVCC HackathonCI4CCREFS
Data Management for Transformer Models -- ReferencesVariantSurvival
VariantSurvival a Shiny app/ R package to identify genotype-treatment responseSVHack_HG002Mosaic
Disease_subtyping_knowledge_graph
PanOriginSV
DSVifier
A bioinformatics pipeline for rapidly evaluating variants and identifying causal variants.expression_and_SNPs_to_clinic
Smooth transition of called variants from RNAseq and expression to the clinicdeeplearningmetagenomics
Understanding relationships between complex combinations of OTUs and chronic diseaseimavirus
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