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monocle3
cufflinks
monocle-release
garnett
Automated cell type classificationcicero-release
sci-plex
repository containing analysis scripts and auxiliary filesScribe
Regulatory networks with Direct Informationcole-trapnell-lab.github.io
leidenbase
worm-rna
The C. elegans transcriptome at single cell resolutionpseudospace
cicero
yeast_umap
Using UMAP on gene expression data from single-gene deletion strains of yeast to identify gene interactionsscRNASeqSim
A simulator for measuring developmental trajectories with single-cell RNA-seqhooke
A package for comparing cell type abundances between conditionsDDRTree
An R implementation of the DDRTree algorithm for learning principal graphsHSMMSingleCell
sci-Plex-GxE
Repository of analysis code for sci-Plex-GxE analysissci-Space
Contains all the code used in the analysis of the sci-Space papermonocle
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/monocle.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=monocle.sdg-zfish
rccm
A modified cross-convergence mapping libraryLove Open Source and this site? Check out how you can help us