cmdoret/Acastellanii_legionella_infection

Stars
2
Language
Python
License
GNU General Publi...
Created about 5 years ago
Updated almost 2 years ago

cmdoret/Acastellanii_legionella_infection

cmdoret

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Analysis of genomic changes induced in Acanthamoeba castellanii C3 following infection by Legionella pneumophila

hicreppy

Python reimplementation of hicrep with compatibility for sparse matrices

tinycov

Command line tool to plot genomic coverage from a BAM file

Acastellanii_genome_analysis

Comparative analysis of the genomes from two Acanthamoeba castellanii strains

HiC_scrambler

Introducing structural variations in Hi-C contact maps to try detecting and reversing them.

dnaglider

Sliding window genome statistics on FASTA files

cmdoret.github.io

My personal website

Acastellanii_genome_annotation

Reproducible container-based pipeline for the annotation of the Acanthamoeba castellanii genome

rdf-network-viz

Prefect workflow to visualize networks from RDF data

Jupyter Notebook

dagws_seq_algo_materials

Slides and exercises from the "Sequence Algorithms" lectures I gave for the data analysis in genomics (DAG) workshop.

Jupyter Notebook

sequence_loopability

Investigating sequence features underlying chromatin loops

Jupyter Notebook

master_archive

Master project for the Molecular Life Sciences master in Bioinformatics, University of Lausanne

CSD_Lfabarum

Genomics pipeline to reproduce the analysis from Matthey-Doret et al., 2019, Genome Biology and Evolution

Acastellanii_hybrid_assembly

Hybrid genome assembly of Acanthamoeba castellanii. Combining long reads, Hi-C and shotgun.