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allele
Documentation for data model of ClinGengenegraph
Presents an RDF triplestore of gene information using GraphQL APIswebsite-clinicalgenome-search
SEARCH V4 :: The aim of the project is to integrate ClinGen's internal data services and public external data services around a common user experience to ensure clinically relevant knowledge about genes and variants is available for use in precision medicine and research.clingen-interpretation
Allele (variant) interpretation model and API for ClinGencommunity-curation
clingen-gene-tracker
Web based gene curation workflow tracking applicationarchitecture
interpretation_json
Python library for creating JSON documents conforming to the DMWG interpretation model.clinvar-api
Software for working with the ClinVar web APIallele-registry-use-cases
Description and support material for a global allele registrygenegraph-ui
User interface for Genegraphclingen-hail-reports
Performs filtering against gnomAD and ClinVar datasets. Uses Hail to report records with a population FAF above certain thresholds by gene.gene-lookup
serveur
expediter
Configuration and documentation of Kafka for data exchangedata-exchange-shared-json
JSON schema utilized to share data from the curation interfaces into the Data Exchange. CONTAINS GENE EXPRESS JSON DATAcg-kb-init
Code for initializing Neo4j database backing cg-knowledgebasegene-prioritization
Python script to generate gene prioritization Excel report for ClinGen curationdata-model-docs
Umbrella project for housing all of the various modeling work by the Data Modeling WG in ClinGengpm
ClinGen Expert Panel Management Systemclingen-terms
OWL Ontology enumerating ClinGen application specific termshypothesis-funcexp-reformatting
Example code for processing Allele Functional Experimental evidence from annotations in hypothes.isclinvar-streams
ld-context
Generator for JSON-LD Context files given OWL ontologies (plus some metadata)clingen-data-model.github.io
Website for data model documentationgarde-manger
Application for feeding data from various sources into the ClinGen Data Exchangeclojure-utility
Clojure Utilityclinvar-raw-producer
Pilot streaming service to share clinvar SCV data with VCIclinvar-submitter
Application for transforming messages formatted according to the data model for ClinVar submissionpersister
The persister project is an adaptable kafka topic consumer that persists all topic messages to a file system. The goal is to provide a means of auditing, troubleshooting, possible data sharing and a rough semblance of backup to the ClinGen data exchanges.ep-management
VCI-transformation
Scripts for transforming VCI JSON-LD into DMWG Interpretation JSON-LDcommon-user-experience
Capture documentation, artifacts, and code assets of the Common User Experience for ClinGen resources.clinvar-ingest
clinvar-ftp-watcher
Cloud Function for detecting new files on the clinvar ftp siteLove Open Source and this site? Check out how you can help us