clbarnes/catmaid-catnap

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2
Language
Python
License
MIT License
Created over 4 years ago
Updated over 3 years ago

clbarnes/catmaid-catnap

clbarnes

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Painting tool using CATMAID data and napari

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Prototype implementation of zarr v3 in rust

molesq

Moving Least Squares algorithm for python

eulerscraper

A script to scrape projecteuler.net's problems

ncollpyde

Mesh containment and line segment intersection queries in Python (over rust)

yarqueue

Yet Another Redis Queue for python; but API-compliant and modern

f_it

Functional Iterator for python

recursum

Rust script to quickly hash all files in a directory tree

plotstyles

A demsontration of the different default plotting styles available in matplotlib

nblast-rs

bct

An unofficial github repository for the Brain Connectivity Toolbox

h5py_like

Base classes and convenience functions for wrapping simple array access functions in a h5py-like API

backports.strenum

Base class for creating enumerated constants that are also subclasses of `str`

CATMAID-synapsesuggestor

nblast-py

Pure-python implementation of NBLAST, for experimentation purposes

coordinates

Convenience class for doing maths with explicit coordinates

asciidoc-named-char-refs

jeiss-convert

Convert Jeiss .dat files to HDF5

smalldataviewer

Command-line tool and python library for visualising small 3D datasets

jeiss-specs

Specifications of output format for "Jeiss" FIBSEMs

citepy

Automatically create citations for packages

arbor

A python implementation of (some of) Arbor.js and related tools

detchar

Command line tool for detecting file encodings

hiveplotter

A python library for creating hive plots from networkx graphs

jfibsem_dat

multiscale_read

Read xarray.DataArrays from multiscale datasets with various metadata standards

mlsnd

Moving Least Squares deformations in N Dimensions

prob_dist

An ipython notebook showing some common probability density functions.

Jupyter Notebook

neuroml-ts

elegans_morphology

extreqs

Parse python requirements.txt files into setuptools extras

arbor-harness

Testing tool for arbor.js reimplementations

problog_tutorial

split_neurons

Find axon-dendrite split points for lots of CATMAID skeleton

raoc

Script to automate random acts of coffee: random scheduled meetups within a group

containers

Useful containers for cluster image processing

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A script for automatically generating some popular playlists on Google Play Music All Access

pyenv-mkenv

Simple script to help create and use pyenv virtualenvs

toolup

Convenience package for installing python-based development tools

imslice

Python library for slicing 3D arrays in arbitrary orientations

inkscape-docker

Unofficial docker image for installation of specific inkscape releases for command-line use.

neurarrow

Specification for neuroscience data in arrow/ parquet format