Discover cidgoh/rcqc Open Source project by @cidgoh

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Created almost 9 years ago
Updated about 8 years ago

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bacpaq

Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data

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ffp_phylogeny

A Galaxy tool for calculating Feature Frequency Profiles (FFP) from fasta sequence and text data.

Python

Wastewater_Contextual_Data_Specification

A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.

specification-training

Training materials about developing and applying data specifications

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FastaUploader

A tool for batch processing large fasta files and accompanying metadata table to upload to repositories via API

Python

cidgoh/rcqc

cidgoh

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