Top Rating
- Top Contributors
  Discover the Top Open Source contributors by country or by language
- Interviews
  Discover real stories from Open Source developers
Discover

Discover your Favorite Language
Discover the top trending repositories and projects on Github. Explore the latest trends in your preferred languages.

Julia

C#

Swift

Ruby

R

JavaScript

C++

Clojure

More Languages
Awesome

Awesome repositories
Discover the most awesome repositories and projects of your favorite languages. Inspired by the Awesome-* lists trend in GitHub.

PHP

MATLAB

Python

Objective-C

Zig

Ruby

Swift

Lua

More Languages
By Country

Rankings by Country
Discover the community of talented open source contributors in each country.

🇵🇳 Pitcairn Islands

🇰🇲 Comoros

🇱🇦 Laos

🇾🇪 Yemen

🇱🇾 Libya

🇻🇺 Vanuatu

🇧🇹 Bhutan

🇸🇸 South Sudan

All Countries Compare Countries

cidgoh/ontotraining

Stars
2
Language
License
Creative Commons ...
Created almost 3 years ago
Updated about 1 year ago

cidgoh/ontotraining

cidgoh

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

A repository for ontology training materials

DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.

LexMapr

LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms

GRDI_AMR_One_Health

A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.

pathogen-genomics-package

This is the DataHarmonizer spreadsheet web application bundled with pathogen genomics data entry and validation templates

nf-ncov-voc

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

VIRUS-MVP

VirusMVP is an interactive heatmap-centric app that integrates viral genomic mutations, lineage information and curated functional impact to study the spread and evolution of viruses in Canada and globally.

ontotrek

A 3d ontology visualizer focusing on OBOFoundry.org ontologies

bacpaq

Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data

geem

Genomic Epidemiology Entity Mart

ffp_phylogeny

A Galaxy tool for calculating Feature Frequency Profiles (FFP) from fasta sequence and text data.

Wastewater_Contextual_Data_Specification

A data specification for harmonizing Wastewater pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via metadata template(s), supported by field and reference guides as well as different curation and new term request SOPs.

specification-training

Training materials about developing and applying data specifications

AWS-IRIDA-DEPLOYMENT

nf-upcoastv

FastaUploader

A tool for batch processing large fasta files and accompanying metadata table to upload to repositories via API

rcqc

Report Calc for Quality Control is a python command line and Galaxy bioinformatics platform tool for text-mining log and data files to create reports and even to stop workflow execution in response to critical quality control issues.