chrishah/Bioinformatics_cheat_sheets

Stars
1
Language
Created about 4 years ago
Updated over 2 years ago

chrishah/Bioinformatics_cheat_sheets

chrishah

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Recipies for running some common bioinformatics software tools and workflows

MITObim

MITObim - mitochondrial baiting and iterative mapping

maker-docker

Docker image as base for building full MAKER image

maker2gff_to_sqn

MitoFish2tbl

Convert MitoAnnotator (MitoFish) annotation file to NCBI feature table format (*.tbl)

short-read-processing-and-assembly

A short introduction to processing and assembly of short (Illumina) NGS sequencing data

phylogenomics_intro_vertebrata

Phylogenomics tutorial based on BUSCO genes

methylkit-docker

post-assembly-intro

AMEB2020_Phylogenomics_demo

genomisc

The repository contains a set of miscellaneous scripts for working with various kinds of genomics data.

docker-intro

A short introduction to using Docker in Bioinformatics

phylogenomics-intro

Phylogenomics tutorial based on BUSCO genes

phylog

useful scripts for the preparation of phylogenomic data

AMEB_2020_practical

demogenas

democratizing genome assembly

guppy-docker

Ubuntu 20.04 with ONT's Guppy basecaller

testing_CWL

prepro

Snakemake pipeline for intitial processing (trimming, errorcorrection, merging) of Illumina data

snakemaker

Snakemake pipeline to run genome annotation with MAKER

BUSCO-docker

Docker image containing a full BUSCO install

longstitch-docker

Debian 10 with longstitch scaffolding pipeline

cegma-docker

Docker image to run CEGMA in Ubuntu 14.04

porechop-docker

Ubuntu 18.04 with porechop installed