chrisamiller/copyCat

Stars
23
Rank 997,121 (Top 20 %)
Language
R
License
Other
Created over 11 years ago
Updated almost 3 years ago

chrisamiller/copyCat

chrisamiller

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a parallel R package for detecting copy-number alterations from short sequencing reads

fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

readDepth

R package for inferring copy number from read depth

rtm-cli

A command-line Remember the Milk client written in perl

igvScreenshot

Create static screenshots of genomic regions using IGV.

docker-genomic-analysis

Basic docker image for ad-hoc genomic analyses

commute-times

calculate drive times from multiple locations and visualize them in google earth

davidapi

A ruby wrapper for a few of the DAVID API functions for functional gene annotation (http://david.abcc.ncifcrf.gov/)

iTunes-to-Guayadeque

copies song ratings from iTunes to Guaydeque music player

docker-R-singlecell

tools for single-cell RNAseq analysis

bioinfoSnippets

Short snippets of code useful for bioinformatics and genomics

docker-phlat

dockerization of phlat hla typing tool

RMEmod

A tool for discovering functional modules by identifying recurrent and mutually exclusive mutational patterns in tumors

docker-meme

docker image for the MEME package (http://meme.ebi.edu.au/)