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ADPfusion
Efficient, high-level dynamic programmingBiobaseXNA
efficient encoding of short RNA and DNA sequencesPrimitiveArray
no-frills Haskell arraysFormalGrammars
Context-free and linear grammars in Haskell (parsing, pretty-printing, embedded DSL)BiobaseInfernal
Haskell library to handle Infernal-related file formatsBiobaseFasta
streaming FASTA handling in HaskellRNAfold
ViennaRNA RNAfold using the ADPfusion libraryGenussFold
MCFGs for Genus-1 RNA PseudoknotsBiobaseTypes
BiobaseBlast
BLAST-related toolsLinguisticsTypes
flake-rPackages
experimental flake to repackage rPackagesForestStructures
Tree and forest structures in HaskellSciBaseTypes
Base types and classes for statistics, sciences and humanitiesOrderedBits
Order bits in a set by population countGrammarProducts
Products of linear and context-free grammarschoener.github.io
Homepage Uni JenaADPfusionSet
dynamic programming for set data structuresoverlay-bioinformatics
nixos package overlays for bioinformatics toolsDPutils
utilities for DPWordAlignment
ViennaRNA-bindings
Bindings to the ViennaRNA package.Forestry
Science and craft of forestsBiobaseTurner
Turner 2004 energy parameter parserflowEMMi
automated model-based clustering of microbial dataghcicabal
Provides a ghci shell with options parsed from multiple cabal files, simplifying work on multiple packages concurrentlyBiobaseFR3D
Importer for FR3D resourcesBenchmarkHistory
Simple Haskell benchmarking system with historyAlignmentAlgorithms
flake-aquadiva
Nix flake for aquadiva.uni-jena.deGene-CluEDO
Gene Cluster Evolution Determined OrderDiscretized
Newtypes to generalize discretized floating point numbersNaturalLanguageAlphabets
Alphabet and word encodings in natural languagesoverlay-python-packages
overlay with python packages for nixosADPfusionForest
Dynamic programming on tree and forest structuresFeatureEngineering
Feature Engineering Examplesoverlay-haskell-dev
haskell development related functionalityRNAdraw
overlay-haskell-packages
Overlay for modifications to existing Haskell packages (and potentially more)Nussinov78
Nussinov78 using the ADPfusion libraryBiobaseENA
European Nucleotide Archive dataflake-statistics
Flakes with a collection of statistical softwareInternedData
Internization for (mostly string) data typesViennaRNA-extras
ViennaRNA v2 extensions in HaskellBiobaseVienna
RNAfold energy tables and Turner 2004 converterCMCompare
Comparison of Infernal covariance modelsbimaps
ADPfusionSubword
BiobaseNewick
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