cemalley/Chen_methods

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Created almost 6 years ago
Updated almost 6 years ago

cemalley/Chen_methods

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Analysis pipelines for Chen et al. manuscript

scRNASeq-bulkRNASeq

single cell and bulk RNASeq analysis scripts

OrthoParser

These programs parse OrthoFinder output, generate group FASTA files, and gather descriptive stats.

ISSCR_2019

Methods relating to my ISSCR 2019 abstract and poster (single cell RNASeq and trajectory inference)

Novelty-coding

Assorted perl scripts for assorted purposes!

Tristan_methods

Single cell RNA-Seq analysis for Tristan et al. manuscript

Jovanovic_methods

Preprocessing and analysis pipeline for Jovanovic et al. astrocytes manuscript.

WES

GATK pipeline for whole exome sequencing iPSC samples

Biowulf_swarm

Utility scripts for creating and running swarm job files on NIH Biowulf.