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sceasy
A package to help convert different single-cell data formats to each otherbatchbench
notebooks
Cellular Genetics Informatics NotebooksSTARsolo
wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seqcellatac
Sanger Cellular Genetics single-cell ATAC-seq pipeline.rnaseq
Fast RNAseq pipelinenf-workshop
Nextflow workshop at the Sanger Institutereprocess_public_10x
Scripts to help get fastqsnf-server
A server application for running Nextlfow workflows10xcellranger
RNAseq pipeline for droplet based protocolscellbender
Repo containing scripts for running cellbenderjupyter-images
Cellular Genetics Informatics Docker Images for Jupyternf-introduction
An introduction to Nextflow, focussed on files and channelsdocs
CellGen IT documentationasthma
Teichlab asthma appdocker-jupyter
Docker image for the Cellular Genetics Informatics JupyterHubcellranger_cite_hash
Processing CITE-seq and cell hashing datasets with Cell Rangervisium2cells
segmenting H&E images from Visium to assign each visium spot to the number of cell, occupancy and other morphological features of cellsGBM-stuff
Storing the scripts for use in the GBM projectFORECasT
Computational prediction of editing outcomes resulting from Cas9-induced double strand breaksLove Open Source and this site? Check out how you can help us