cellgeni/FORECasT cellgeni/FORECasT

  • This repository has been archived on 22/May/2023
  • Stars
    star
    1
  • Language
    JavaScript
  • License
    GNU General Publi...
  • Created about 6 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
cellgeni/FORECasT
github

cellgeni

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Computational prediction of editing outcomes resulting from Cas9-induced double strand breaks

More Repositories

1

sceasy

A package to help convert different single-cell data formats to each other
R
350
star
2

batchbench

R
46
star
3

notebooks

Cellular Genetics Informatics Notebooks
HTML
15
star
4

STARsolo

wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
Shell
15
star
5

cellatac

Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Nextflow
10
star
6

rnaseq

Fast RNAseq pipeline
Groovy
8
star
7

nf-workshop

Nextflow workshop at the Sanger Institute
Shell
7
star
8

reprocess_public_10x

Scripts to help get fastqs
Shell
6
star
9

nf-server

A server application for running Nextlfow workflows
Python
4
star
10

10xcellranger

RNAseq pipeline for droplet based protocols
Groovy
2
star
11

cellbender

Repo containing scripts for running cellbender
R
2
star
12

nf-scautoqc

Nextflow implementation of scAutoQC pipeline
Python
1
star
13

jupyter-images

Cellular Genetics Informatics Docker Images for Jupyter
Dockerfile
1
star
14

nf-introduction

An introduction to Nextflow, focussed on files and channels
Nextflow
1
star
15

docs

CellGen IT documentation
1
star
16

asthma

Teichlab asthma app
R
1
star
17

docker-jupyter

Docker image for the Cellular Genetics Informatics JupyterHub
Dockerfile
1
star
18

cellranger_cite_hash

Processing CITE-seq and cell hashing datasets with Cell Ranger
Shell
1
star
19

GBM-stuff

Storing the scripts for use in the GBM project
Java
1
star