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ontology-mapper
a tool for mapping free-text descriptions of entities to ontology termsBioPlex
R-side access to PPI data from Gygi labnhanes-database
BioPlexAnalysis
Applications and downstream analysis of BioPlex PPI datadocker-rstudio-server
A repository for RStudio Server containers, with the goal of providing multi-architecture (ARM64 and AMD64) images.HarvardInovalonUserGuide
User guide for Harvard's Inovalon resources.computervision
Everything to get started with computer visionphonto
PHenome - PHenome ONTOlogy for NHANESdocker-analytic-workbench
scDiagnostics
Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq dataBioPlexPy
Python-side access to PPI data from Gygi labgwasCatSearch
tooling for semantic search of NHGRI GWAS catalogNHANES-metadata
scConform
Uncertainty quantification for cell type annotation using conformal inferenceosca-workbench
Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.HuBMAPy
A package to query the HuBMAP Human Reference Atlas Ontologysystems-immunology-workshops
2023 Workshops to Accompany Systems Immunology Coursehsdm-r-course
Website for materials for the R component of HSDM's Research Design and Analysis CourseCyCIFData
Collection of public CyCIF datasetshmc-clinic-2022-23
HMC clinic project 2022/23nhanes-exploration
Exploring NHANES data through the nhanesA packageworkbench-python-workshop
8-hour workshop introducing Python using The Carpentries new workbench template.MouseAgingData
Mouse aging multi-omics project with Rubin Labunbalanced-data-example
This repository contains code to illustrate the effects of unbalanced data on classification models, including poor optimization, Hessian matrix issues, and biased model performance.Love Open Source and this site? Check out how you can help us