Discover cboettig/AdaptiveDynamics Open Source project

📓 Source code and version history for my online lab notebook

labnotebook

📓 Ecology Letters review paper: Noise-driven phenomena in population biology

noise-phenomena

📦 R package for working with Content Identifiers

contentid

nonparametric-bayes

📓 Non-parametric Bayesian Inference for Conservation Decisions

Parsing access logs from S3

s3-log-parse

Python

quarto-hugo-material-dashboard

Adapting material-dashboard to Quarto and Hugo

SCSS

bad-forecast-good-decision

📓 Utility provides a more meaningful measure of forecast skill than goodness-of-fit

functions for making R interact with social media

socialR

compendium

📓 Project Name Here

dockermachine

Simple wrapper around docker-machine tool for creating and managing cloud instances across many providers

pdg_control

📓 Pretty Darn Good Control: applications in optimal control

birddb

Import and query all of eBird locally

earlywarning

📓 Methods for detecting early warning signals of critical transitions

schemar

📦 Create Structured Data Using the Schema.org Vocabulary

berkeley-linux-config

🖥️ Linux needs are not always well documented by campus IT. Here are some solutions that worked for me, PR's welcome.

🌐 Hugo theme building on Bootstrap Material Kit

hugo-material

📦 A local content-based storage system for NEON data

neonstore

taxalight

A lightning-fast taxonomic database store backed by LMDB

eml2

📦 A list-based rewrite of higher-level functions from EML

structured-populations

📦 Stochastic Population Dynamics in Ecology with Age and Stage Structure

codemeta

📦 A smaller codemetar

whiskey

Jekyll-based template for Bourbon+Neat+Bitters+Refills SASS

decisions-vs-transients

📓

📦 Common utilities for RDF. Package has helper routines only, limited stand-alone use.

rdftools

mcmcTools

tools for Markov Chain Monte Carlo in R

wrightscape

📦 Infer adaptive landscapes from phylogenetic trees

nexld

📦 Working with NeXML as JSON-LD

cron-container

Run an R script as a cron job using Docker

Dockerfile

populationdynamics

📦 Tools to simulate various population dynamics models in ecology

regimeshifts

📦 R package providing simulations and data from ecological regime shifts

dissertation

R Interface to the MINIO client

minioclient

forecasts-darts-framework

Experimental example workflows with the darts framework

Jupyter Notebook

prosecutors-fallacy

📓 Migrated from the prosecutor branch of my earlywarning repository

example-notebooks

because repos are actually better than gists

Jupyter Notebook

ptagir

R interface to the ptagis database of tagged fish

duckdbfs

Simple wrappers for duckdb to open local and remote filesystems

config

Machine confuration tweaks

ews-review

📓 Early warning signals review mansucript

PostScript

pmc

📦 Phylogenetic Monte Carlo: Quantifying Uncertainty in Phylogenetic Methods (now on CRAN)

warningsignals

📓

bs-tipping

📓 paper on state tipping vs bifurcation tipping

multiple_uncertainty

📓

eco4cast-dashboard-material

A dashoard using my material theme

SCSS

prov

An index for a data store, permitting generation and querying of schema.org, prov, dcat dataset descriptions

sandbox

miscellaneous scripts and scratchpads

nimbios-transients

Example data that may or may not contain transients

PostScript

hugo-material-theme

🌐 Hugo port of Creative Tim Material Kit

🗄️ A repository for testing the piggyback R package

piggyback-tests

rgbif_mcglinn

fluctuationDomains

📓 Code for "Fluctuation Domains in Adaptive Evolution", published in TPB

forecasting-limits

bin

website

rdbms-tutorial

Relational Database Management System Tutorial in R

talks-2018-pointblue

🎤

Open Science: Balancing Individual Incentives with Common Good

openscience-whitepaper

2015

Lab notebook for 2015

a reprex of the bug really

quarto-hugo

📦 Minimal demo for R interface to FORTRAN

fortran

debug-windows

quarto-material

A hugo theme / template based on bootstrap Cover example

hugo-cover-theme