Discover carpentries-incubator/lc-xml Open Source project

"Intermediate Research Software Development Skills (Python)" Lesson Material

python-intermediate-development

Introduction to Conda for (Data) Scientists

introduction-to-conda-for-data-scientists

Reproducible Computational Environments using Containers

docker-introduction

SDC-BIDS-fMRI

fMRI Imaging Analysis

Introduction to web scraping

lc-webscraping

Pre-alpha {targets} workshop

targets-workshop

deep-learning-intro

Learn Deep Learning with Python

A Carpentry style lesson on machine learning with Python and scikit-learn.

machine-learning-novice-sklearn

Bioconductor data science introduction

bioc-intro

SDC-BIDS-sMRI

Structural Neuroimaging Analysis in Python

Extra Unix Shell Material

shell-extras

Packaging and Publishing with Python

python-packaging-publishing

SDC-BIDS-dMRI

Introduction to dMRI

Workflow management with Nextflow and nf-core

workflows-nextflow

Nextflow

SDC-BIDS-IntroMRI

Introduction to MRI and BIDS

Materials for a workshop introducing machine learning to biologists

ml4bio-workshop

GPU Programming with Python and CUDA.

lesson-gpu-programming

bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

bioc-project

Introduction to the Bioconductor project

machine-learning-librarians-archivists

Introduction to AI for GLAM

Introduction to Snakemake for Bioinformatics

snakemake-novice-bioinformatics

Building Websites with Jekyll & GitHub Pages.

jekyll-pages-novice

A lesson exploring the Julia language

julia-novice

Julia

python-humanities-lesson

Python for Humanities

intro-to-modern-fortran

Introduction to Modern Fortran

reproducible-publications-quarto

Introduction to Reproducible Publications with Quarto

Instructions for contributing the to free and open source materials for teaching foundational computational and data science skills to researchers maintained by The Carpentries at https://software-carpentry.org/lessons/ https://librarycarpentry.org/lessons/ and http://datacarpentry.org/lessons/

swc_github_flow

high-dimensional-stats-r

High-dimensional statistics with R

Pangenome Analysis in Prokaryotes Lesson

pangenomics

Text Analysis with Python

python-text-analysis

Introduction to Workflows with Common Workflow Language

cwl-novice-tutorial

An introduction to singularity

singularity-introduction

Parallel Programming in Python

lesson-parallel-python

A course on tools and practices for open, sustainable and FAIR (Findable, Accessible, Interoperable and Reusable) research software

fair-research-software

a Carpentries-style lesson introducing the basics of data visualization

intro-data-viz

task-management

CW24 Hack Day project - Carpentries-style lesson "Task Management for Humans as Self Care"

open-science-with-r

Carpentry-style lesson on how to use R, RStudio together with git & Github to promote Open Science practices.

python-business

Python for Business

Introduction to Data Science and AI for senior researchers

data-science-ai-senior-researchers

FAIR in (biological) practice

fair-bio-practice

Managing Open and Reproducible Computational Projects

managing-computational-projects

template

A blank starting point for new lessons in The Carpentries Incubator

Genome Mining in Prokaryotes

genome-mining

SageMath Software Carpentry Lesson

sage-lesson

Repo to capture ideas about new Data Carpentry lessons or new versions of existing lessons

lesson-ideas

markdown-intro

Introduction to Markdown

Introduction to the Fundamentals of Scientific Metadata

scientific-metadata

sql-humanities-lesson

SQL for Humanities

Project Example for the Lesson: Introduction to Reproducible Publications with Quarto

quarto-project-example

JavaScript

jupyter_maps

Interactive Maps in the Jupyter Notebook

git-novice-branch-pr

Version Control with Git

From a Spreadsheet to a Database

capstone-novice-spreadsheet-biblio

Foundational Computer Skills

foundational-computer-skills

Learn Julia workflows for data-intensive research

julia-data-workflow

Data Harvesting for Agriculture

data-harvesting-for-agriculture

carpentries-incubator.org

Data Science For Practicing Clinicians

Data-Science-for-Docs

A lesson on Python packaging and publishing, built using the Carpentries Workbench

python_packaging

lesson-R-packaging

R Packaging

pymarc_basics

Material for a lesson introducing PyMARC

gap-lesson

Programming with GAP

Creating Interactive Data Visualizations with Python

python-interactive-data-visualizations

Introduction to Probabilistic Programming

statistical-probabilistic-programming-r

jupyter-notebooks-intro

Introduction to Jupyter notebooks

Open Refine for Humanities

OpenRefine-humanities-lesson

Introduction to Harvesting Twitter Data with Twarc

twitter-with-twarc

life-sciences-workshop

Life Sciences Workshop

Introduction to Machine Learning with Python

machine-learning-novice-python

A template software project for use in Intermediate Research Software Development Skills In Python course. Contact: @anenadic

python-intermediate-inflammation

The Carpentries Lesson Development Study Groups

study-groups

ARCHIVED - Data Analysis and Visualization in R for Ecologists

R-ecology-lesson

statistical-thinking-public-health

Statistical thinking for public health

Introduction to responsible machine learning with Python

machine-learning-responsible-python

Carpentries Incubator lesson to learn how to build blog sites with Hugo and GitHub Pages

blogging-with-hugo-and-github-pages

Statistical Inference for Biology

statistical-inference-for-biology

Fair and explainable ML workshop

fair-explainable-ml

FAIR Data Management for Long-term Agriculture Experiments

fair-data-management-agriculture

spreadsheet-humanities-lesson

Data Organization in Spreadsheets for Humanities

Statistical analysis in R for public health.

statistics-r-public-health

git-Rstudio-course

Git Using RStudio

Frictionless Data for Agriculture Research

frictionless-data-agriculture

A Data-Carpentry-style lesson on some ML techniques in R

r-ml-tabular-data

citable-software

Making Code Citable

new lesson on image classification with convolutional neural networks

intro-image-classification-cnn

An introduction to the Internet of things using a motorcontroller and sensors

iot-novice

python-modeling-power-consumption

Modeling Time Series Data for Engineers

gpu-speedups

GPU Speedups in Python

r-for-artists

R for Artists

Library Carpentry: Introduction to R and litsearchr

lc-litsearchr

TeX

hpc-workflows

Creating HPC Workflows using Snakemake

latex-novice-typesetting

Typesetting in LaTeX

Single-cell RNA Sequencing Data Analysis

scrna-seq-analysis

RNA-Seq: Data Readiness for Machine Learning Applications

rna-seq-data-for-ml

Indigenous-Data-Sovereignty

Introduces the concepts and framework of Indigenous Data Sovereignty and Governance.

java-intro

An Introduction to Java Programming

100

r-geospatial-urban

Geospatial Data Carpentry with R for Urbanists