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ProjecTILs
Interpretation of cell states using reference single-cell mapsUCell
Gene set scoring for single-cell datascGate
marker-based purification of cell types from single-cell RNA-seq datasetsSTACAS
R package for semi-supervised single-cell data integrationGeneNMF
Methods to discover gene programs on single-cell dataSignatuR
A database of useful gene signatures for single-cell analysisProjecTILs_CaseStudies
A repository of case studies using ProjecTILsTILPRED
Tumor-Infiltrating CD8 Lymphocytes states predictionscGate.demo
scGate_models
Cell type gating models for scGateCD8_human_TIL_atlas_construction
HiTME
High-resolution Tumor Micro-Environment cell type classification and compositional analysis for scRNA-seqTcell_clonal_analysis
Reproducible code for reference-based T cell clonal analysishuman_CD8_TIL_CaseStudies
Projection example using a human CD8 TIL reference map.iSEE_Shiny_CD8TIL_2019
scGate.benchmark
UCell_demo
scooter
Yerly_BCC_wounding
Code to reproduce the results by Yerly et al. (2024)Love Open Source and this site? Check out how you can help us