canlab/preprocess

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MATLAB
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GNU General Publi...
Created over 8 years ago
Updated about 5 years ago

canlab/preprocess

canlab

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All of the preprocessing code

CanlabCore

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Neuroimaging_Pattern_Masks

Brain signature patterns, atlases of regions, and meta-analysis masks for neuroimaging data analysis.

MediationToolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

Lindquist_Dynamic_Correlation

Martin Lindquist's dynamic correlation toolboxes. Designed for fMRI analysis, useful for other applications too.

CANlab_help_examples

How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.

Canlab_MKDA_MetaAnalysis

Coordinate-based meta-analysis for neuroimaging using Multilevel Kernel Density Analysis and various other statistical tools (chi-square, clustering, correspondence analysis, parcellation)

RobustToolbox

Robust regression toolbox for neuroimaging data

FMRI_simulations

spm12

CanlabScripts

A compilation of useful scripts commonly used in canlab

Jupyter Notebook

Paradigms_Public

Publicly available canlab experimental paradigms

2017_kragel_mfc_generalizability_natneurosci

MATLAB code for identifying generalizable brain representations of pain, cognitive control, and negative emotion

WAViMedEEG

Jupyter Notebook

spm8

Version of SPM8 with the Canlab's internal modifications

cognitive_regulation_physiology

Data and scripts for Matthewson, Woo, & Wager (in prep)

cantainer

Containerizing the Canlab code

2021_Ceko_MPA2_Aversive

Attenuating_neural_threat_expression_with_imagination_2018

data to accompany neuron publication Attenuating neural threat expression with imagination (2018)

canlab_single_trials

A repository and data interface for MVPA education and model/algorithm development

canlab.github.io

WASABI_public

Public repository for the Warmth, Anticipation, Sensation, Aversion, and Body-part Imaging Study (WASABI)

CANLab_PsychoPy_Toolbox

Ease of use PsychoPy Wrappers for efficient creation of CANLab stimulus paradigms in the fMRI scanner

2020_Visceral_and_Somatic_Pain

Code used in Van Oudenhove, Kragel, et al. 2020

pain_biotyping

ooFmriDataObjML

Object oriented ML framework for fmri_data objects

petre_scope_of_pain_representation

2021_Koban_NRN_SelfInContext

ANiC.github.io

Affective Neuroimaging Collaboratory