bwallace/Deep-PICO

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Python
Created about 9 years ago
Updated over 7 years ago

bwallace/Deep-PICO

bwallace

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Deep-ish learning for PICO extraction from abstracts

rationale-CNN

A keras implementation of our CNNs with rationales

curious_snake

an active learning framework in python

abstrackr-web

web-based citation screening tool

OpenMeta-analyst-

intuitive software for advanced meta-analysis

CNN-for-text-classification

A simple CNN implementation in Keras.

ACL-2014-irony

Code and data from our ACL 2014 paper "Humans Require Context to Infer Ironic Intent (so Computers Probably do, too)"

RRnlp

NLP for evidence-based medicine. https://www.robotreviewer.net/.

INF-385T-applied-data-mining

Jupyter Notebook

RCT-summarization-data

Data from our AMIA 2020 paper "Generating (Factual?) Narrative Summaries of RCTs: Experiments with Neural Multi-Document Summarization"

Jupyter Notebook

pubmedpy

a small library for fetching and encoding pubmed abstracts for input into classification tools (e.g., libsvm or Weka)

citation-screening

code for semi-automating screening of biomedical citations for systematic reviews.

crowd-sourced-ebm

Data and code from our work on crowd-sourcing evidence-based medicine (specifically, citation screening).

automating-ebm-resources

A curated set of resources for automating evidence-based medicine

computational-irony

A repository for code & data pertaining to our (ARO-funded) "Sociolinguistically Informed NLP" project on irony detection.

dr-reviews-gender

Analyzing the reviews of male and female physicians (from RateMDs.com)

Jupyter Notebook

copd_db

open source application for real-time meta-analyses of genetic data pertaining to copd, in python and R.

pymc-ordinal-regression

robustness

code for robustness analysis of meta-analyses.

PMCID_getter

a small tool for fetching pubmed central (PMC) IDs -- when available -- from either paper titles or PMIDs.

irony-redux

A (clean) repo for the our ARO funded work on computational irony.

aih_150

class project for cs150AIH

JAS

Code associated with our EMNLP 2013 paper, "A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication"

RoboSum

(Narrative) evidence synthesis, automatically

crowd-extraction

Jupyter Notebook

UMLS_PICO_tagging

war-on-cars

Jupyter Notebook

seq2tree-MeSH

w3phi-2015

Data used for our w3phi paper (at AAAI 2015).

evidence_inference

Official project website for NSF CAREER Award 1750978