• Stars
    star
    1
  • Language
    Python
  • Created about 5 years ago
  • Updated over 3 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

Dicom_RT_and_Images_to_Mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images
Python
86
star
2

Segmentation_Evaluation_Tools

Tools for quantitative evaluation of prediction segmentations (Dice, Jaccard, volume similarity, false_negative, false_positive, mean, median, max, and std surface distances)
Python
8
star
3

Dicom_Data_to_Numpy_Arrays

For parallel creation of RT structures into numpy arrays for deep learning training purposes
Python
6
star
4

RegisteringImages

Tools for registering images with Dicom Registration files
Python
3
star
5

Create_RT_From_Dicom_and_Mask

This is for the creation of a Dicom_RT structure using a template RT structure, the dicom images, and a mask
Python
3
star
6

Intro_to_Raystation

small intro teaching some useful things for raystation along with basic code
Python
2
star
7

Cyclical_Learning_Rate

Code adapted from https://github.com/bckenstler/CLR
Jupyter Notebook
2
star
8

AAPM_Summer_School_Workshop

This is a deformable registration code, adapted from the voxelmorph code available here: https://github.com/voxelmorph/voxelmorph
Jupyter Notebook
2
star
9

Make_Single_Images

Converting 3D images into groups of 2D images for speed of loading
Python
2
star
10

Nifti_To_Dicom

Functions for turning nifti files to dicom
Python
2
star
11

Data_Generators

Data generators that I use
Python
2
star
12

Finding_Optimization_Parameters

Tools to help find the best parameters for your network
Python
2
star
13

Image_Processors_Module

Image processors for keras, predictive models, datasets, and example loaders
Python
2
star
14

Anonymize_Dicom

A simple tool to anonymize DICOM files
Python
2
star
15

Easy_VGG16_UNet

This is code to create an easy to use VGG16 pre-training with UNet attached
Python
1
star
16

Teaching-Python-to-Matlab-Users

Files for teaching python to matlab users
Jupyter Notebook
1
star
17

PDF_To_JPG_CSharp

A program which runs through a provided list of file locations to convert pdfs to jpegs
C#
1
star
18

WorkingWPythonAria

Some basic work w Python and Aria
Jupyter Notebook
1
star
19

AW_Liver_Lobes_To_Raystation

Code for taking segmentations created on the AW and transforming them into Raystation segmentations
Python
1
star
20

Resample_Class

Python
1
star
21

AAPM_SummerSchool_Jinzhong_Workshop

Jupyter Notebook
1
star
22

Raystation_Export_Oblique_Images_to_mhd

Export obliquely acquired examinations and ROIs to a folder
Python
1
star
23

AAPM_Summer_School_Court_Workshop

Jupyter Notebook
1
star
24

Copy_Folders

Function to copy folders from one location to another
Python
1
star
25

Plot_And_Scroll_Images

Python
1
star
26

ExtractPlanInfo

A C# script for pulling information from Aria regarding a list of MRNs
C#
1
star
27

Callbacks

Python
1
star
28

RCBV-Calculator

Python
1
star
29

Prediction_Model_Class

My base class for letting the server predict from multiple models
Python
1
star
30

Copy-Shared-Google-to-Colab

This will let you copy over a folder from a shared link to your own work station in google colab
Jupyter Notebook
1
star
31

Make_Raystation_Data_Structure

Go through all patients in a raystation database to create a structure of MRN, Cases, Exams, and rois
Python
1
star
32

Keras_Utils

Python
1
star
33

Local_Recurrence_Work

Scripts to determine if local recurrence occurred within region of minimum ablation
Python
1
star
34

Unzip_Tool

A small tool to unzip files
Python
1
star
35

Base_Deeplearning_Code

The base code that all of my deep learning projects will reference from
1
star
36

icecream_images

1
star
37

TeachingGithubProcedures

A simple repository designed to explain the commands of GitHub
Jupyter Notebook
1
star
38

Liver_Lobe_Segments_Dicom_Curation_to_Niftii

Steps and code for processing dicom lobe segments to correct for overlapping/lacking segmentations to niftii arrays
Python
1
star