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brainrender
a python based software for visualization of neuroanatomical and morphological data.cellfinder
Automated 3D cell detection in very large imagesbrainglobe-atlasapi
A lightweight python module to interact with atlases for systems neurosciencebrainreg
Automated 3D brain registration with support for multiple species and atlases.slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlibbrainglobe-segmentation
Segmentation of anatomical structures in a common coordinate spacecellfinder-napari
Efficient cell detection in large images using cellfinder in naparicellfinder-core
Standalone cellfinder cell detection algorithmbrainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.morphapi
A lightweight python package to download neuronal morphologiesbrainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suitebrainglobe-registration
Registration to BrainGlobe atlases in napari using Elastixbg-brainrender-gui
A GUI built on brainrender: visualise brain regions, neurons and labelled cells.bg-atlasgen
Tools for packaging atlases for use with BrainGlobebrainglobe-utils
Shared general purpose tools for the BrainGlobe projectprobeplanner
Helps plan where to put things in brainsBrainGlobe
General information, resources and dicussions for the BrainGlobe project.brainglobe-meta
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.brainglobe.github.io
brainglobe.info websiteimio
Loading and saving of image data.napari-brainreg
Visualise brainreg registration outputcellfinder-visualize
bgviewer
Visualisation and exploration of brain atlasesbrainrender-docs
brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.brainglobe-template-builder
Build unbiased anatomical templates from individual imagesnapari-cellfinder
brainglobe-space
Anatomical space conventions made easy.bg-gitbook
Mirror of the brainglobe GitBook pagenapari-brainreg-standard
Visualise brainreg registration output in standard spaceactions
Re-usable GitHub Action scriptsbrainglobe-web
brainglobe.info websitebrainglobe-stitch
A napari plugin for stitching large tiled 3D imaging datasets.github
Common templates for BrainGlobe repositories.course-dec-2023
Materials for the BrainGlobe & napari course at the Sainsbury Wellcome Centreslides-roadmap-oct-2023
napari-experimental
micrometa
Parsing of whole-brain microscopy metadataLove Open Source and this site? Check out how you can help us