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brainrender
a python based software for visualization of neuroanatomical and morphological data.cellfinder
Automated 3D cell detection in very large imagesbrainglobe-atlasapi
A lightweight python module to interact with atlases for systems neurosciencebrainreg
Automated 3D brain registration with support for multiple species and atlases.slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlibbrainglobe-segmentation
Segmentation of anatomical structures in a common coordinate spacecellfinder-napari
Efficient cell detection in large images using cellfinder in naparicellfinder-core
Standalone cellfinder cell detection algorithmbrainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.morphapi
A lightweight python package to download neuronal morphologiesbrainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suitebrainglobe-registration
Registration to BrainGlobe atlases in napari using Elastixbg-brainrender-gui
A GUI built on brainrender: visualise brain regions, neurons and labelled cells.bg-atlasgen
Tools for packaging atlases for use with BrainGlobebrainglobe-utils
Shared general purpose tools for the BrainGlobe projectbrainrender_paper
Code for recreating the figures in the brainrender paper (Claudi et al. 2020)probeplanner
Helps plan where to put things in brainsBrainGlobe
General information, resources and dicussions for the BrainGlobe project.brainglobe-meta
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.brainglobe.github.io
brainglobe.info websiteimio
Loading and saving of image data.napari-brainreg
Visualise brainreg registration outputcellfinder-visualize
bgviewer
Visualisation and exploration of brain atlasesbrainrender-docs
brainglobe-template-builder
Build unbiased anatomical templates from individual imagesnapari-cellfinder
brainglobe-space
Anatomical space conventions made easy.bg-gitbook
Mirror of the brainglobe GitBook pagenapari-brainreg-standard
Visualise brainreg registration output in standard spaceactions
Re-usable GitHub Action scriptsbrainglobe-web
brainglobe.info websitebrainglobe-stitch
A napari plugin for stitching large tiled 3D imaging datasets.github
Common templates for BrainGlobe repositories.course-dec-2023
Materials for the BrainGlobe & napari course at the Sainsbury Wellcome Centreslides-roadmap-oct-2023
napari-experimental
micrometa
Parsing of whole-brain microscopy metadataLove Open Source and this site? Check out how you can help us