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MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.AppliedGenomeResearch
course about NGS data processing: genomics and transcriptomicsteaching
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.APPLS
Applied Python Programming for Life ScientistsRNA-Seq_analysis
scripts for RNA-Seq analysisMolecularMethodsInGenomeResearch
practical course about lab methods in genome researchMYB_annotator
This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.FlavonoidFriday
Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweetsMybMonday
MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweetsKIPEs
Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.script_collection
Collection of scripts to solve small bioinformatic challenges.yam
scripts associated with yam genome assemblyLongReadWalker
closing gaps in long read assemblies by long read walkingncss2018
Genome-wide investigation of non-canonical splice sitesBoas_Pucker
Homepage of Boas Pucker listing publications and professional activitiesNAVIP
Neighborhood-Aware Variant Impact PredictorbananaMYB
scripts associated with the genome-wide analysis of MYBs in the banana genometeaching_concepts
Teaching concept collectionbHLH_annotator
automatic annotation of bHLH gene family in plantsyam_scripts
all my yam scriptsvivi-bud-dev
collection of scripts related to the bud development study in Vitis viniferaMtMYBs
scripts associated with the genome-wide investigation of MYBs in MedicagoAppliedPlantGenomics
materials and scripts used for Applied Plant GenomicsPythonTUBS
Python introduction for life scientistsvariant_calling
variant calling and processingGKseq
scripts for Arabidopsis thaliana resequencing analysesPBBtools
collection of mini tools for the BioinfToolServerbanana
BnaGeneticMarkers
analysis and mapping of genetic markers in Brassica napusbanana_transcriptomics
scripts associated with banana transcriptomicsAppliedPlantTranscriptomics
Collection of materials belonging to the Applied Plant Transcriptomics courseVitisGenomics
CaryoAnthoBlock
investigation of expression levels of anthocyanin biosynthesis genes in the CaryophyllalesPEPD
DataLiteracyInPlantSciences
scripts and data sets associated with Data Literacy in Plant Sciences courseNFkB
NFkB investigationAt7
Python scripts related to the At7 sequencing projectcodon_usage
script associated with codon usageCHS
CHS gene structure prediction analysisdigi_fellowship
materials in relation to my digital teaching fellowshippitaya
script associated with pitaya re-analysisCoExp
Co-Expression analysis toolorthogroups
script related to the filtering and analysis of orthogroups in the CaryophyllalesAhaGenome
script associated with A. halleri genome assemblyselfie
all script associated with gf-selfieGenomeAssemblies2018
all scripts involved in the genome assembly and investigation processCaMYBs
investigation of the R2R3 MYBs in Cicer arietinumspark
lycocyc
collection of scripts for lycopene cyclase analysisOverview
Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.Love Open Source and this site? Check out how you can help us