bpucker/MybMonday bpucker/MybMonday

  • Stars
    star
    10
  • Rank 1,802,982 (Top 36 %)
  • Language
    Python
  • Created over 3 years ago
  • Updated almost 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
bpucker/MybMonday
github

bpucker

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional background to the #MYB_Monday tweets

More Repositories

1

MGSE

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
Python
24
star
2

AppliedGenomeResearch

course about NGS data processing: genomics and transcriptomics
Python
23
star
3

teaching

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
19
star
4

APPLS

Applied Python Programming for Life Scientists
Python
18
star
5

RNA-Seq_analysis

scripts for RNA-Seq analysis
Python
16
star
6

MolecularMethodsInGenomeResearch

practical course about lab methods in genome research
Python
15
star
7

MYB_annotator

This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies.
Python
13
star
8

FlavonoidFriday

Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation, and repelling herbivores.This repository provides additional background to the #FlavonoidFriday tweets
11
star
9

KIPEs

Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new transcriptome of genome sequence assembly.
Python
8
star
10

script_collection

Collection of scripts to solve small bioinformatic challenges.
Python
7
star
11

yam

scripts associated with yam genome assembly
Python
7
star
12

LongReadWalker

closing gaps in long read assemblies by long read walking
Python
5
star
13

ncss2018

Genome-wide investigation of non-canonical splice sites
Python
5
star
14

Boas_Pucker

Homepage of Boas Pucker listing publications and professional activities
3
star
15

NAVIP

Neighborhood-Aware Variant Impact Predictor
Python
3
star
16

bananaMYB

scripts associated with the genome-wide analysis of MYBs in the banana genome
Python
3
star
17

teaching_concepts

Teaching concept collection
3
star
18

bHLH_annotator

automatic annotation of bHLH gene family in plants
Python
3
star
19

yam_scripts

all my yam scripts
Python
2
star
20

Nd1_PacBio

scripts associated with the Nd-1 genome assembly based on PacBio data
Python
2
star
21

vivi-bud-dev

collection of scripts related to the bud development study in Vitis vinifera
Python
2
star
22

MtMYBs

scripts associated with the genome-wide investigation of MYBs in Medicago
Python
2
star
23

AppliedPlantGenomics

materials and scripts used for Applied Plant Genomics
Python
2
star
24

PythonTUBS

Python introduction for life scientists
2
star
25

variant_calling

variant calling and processing
Python
2
star
26

GKseq

scripts for Arabidopsis thaliana resequencing analyses
Python
2
star
27

PBBtools

collection of mini tools for the BioinfToolServer
Python
1
star
28

banana

Python
1
star
29

BnaGeneticMarkers

analysis and mapping of genetic markers in Brassica napus
Python
1
star
30

banana_transcriptomics

scripts associated with banana transcriptomics
Python
1
star
31

AppliedPlantTranscriptomics

Collection of materials belonging to the Applied Plant Transcriptomics course
1
star
32

VitisGenomics

Python
1
star
33

CaryoAnthoBlock

investigation of expression levels of anthocyanin biosynthesis genes in the Caryophyllales
Python
1
star
34

PEPD

Python
1
star
35

DataLiteracyInPlantSciences

scripts and data sets associated with Data Literacy in Plant Sciences course
Python
1
star
36

NFkB

NFkB investigation
Python
1
star
37

At7

Python scripts related to the At7 sequencing project
Python
1
star
38

codon_usage

script associated with codon usage
Python
1
star
39

CHS

CHS gene structure prediction analysis
Python
1
star
40

digi_fellowship

materials in relation to my digital teaching fellowship
Python
1
star
41

pitaya

script associated with pitaya re-analysis
Python
1
star
42

CoExp

Co-Expression analysis tool
Python
1
star
43

orthogroups

script related to the filtering and analysis of orthogroups in the Caryophyllales
Python
1
star
44

AhaGenome

script associated with A. halleri genome assembly
Python
1
star
45

selfie

all script associated with gf-selfie
Python
1
star
46

GenomeAssemblies2018

all scripts involved in the genome assembly and investigation process
Python
1
star
47

CaMYBs

investigation of the R2R3 MYBs in Cicer arietinum
Python
1
star
48

spark

Python
1
star
49

lycocyc

collection of scripts for lycopene cyclase analysis
Python
1
star
50

Overview

Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.
1
star