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MedSAM
Segment Anything in Medical ImagesscGPT
U-Mamba
U-Mamba: Enhancing Long-range Dependency for Biomedical Image SegmentationGraph-Mamba
Graph-Mamba: Towards Long-Range Graph Sequence Modelling with Selective State SpacesMedSAMSlicer
3D Slicer Plugin for Segment anything in medical imagesjoint-ner-and-re
This repository contains the corpora and supplementary data, along with instructions for recreating the experiments, for our paper: "End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models".BIONIC
Biological Network Integration using ConvolutionsBLEEP
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learningclinical-camel
DeepVelo
AGILE
AGILE Platform: A Deep Learning-Powered Approach to Accelerate LNP Development for mRNA DeliveryMEDIQA-Chat-2023
A repository for organizing our submission to the MEDIQA-Chat Tasks @ ACL-ClinicalNLP 2023DPM-MedImgEnhance
Pre-trained Diffusion Models for Plug-and-Play Medical Image EnhancementscFormer
OCAT
genomic-FM
Transformer-GCN-QA
A multi-hop Q/A architecture based on transformers and GCNs.MAESTER
Masked Autoencoder Guided Segmentation at Pixel ResolutionCONCERTO
Carcinogenicity prediction with graph neural networksLabChat
CellSeg-Transformers
NanoMASK
mouse pet-ct image segmentationTransplant_Time_Series
CongFu
CongFu: Conditional Graph Fusion for Drug Synergy PredictionIntegrAO
Integrate Any Omics: Towards genome-wide data integration for patient stratificationsimATAC
A single-cell ATAC-seq simulation framework (R package)DES
Single-Shot Object Detection with Enriched SemanticsAMOS-MM-Solution
Solution to the AMOS-MM challengeSIMLR_PY
Python version of SIMLRunicell
Universal cellular segmentation modelsSIMLR
Single-cell Interpretation via Multi-kernel LeaRninggcn-drug-repurposing
Network_Enhancement
A general method to denoise weighted biological networksrOCAT
shape-attentive-unet
Code for our paper SAUNet: Shape Attentive U-Net for Interpretable Medical Image Segmentation. https://arxiv.org/pdf/2001.07645.pdfViST-Echo
PD's thesis work towards a Video Swin Transformer for echocardiographic data.csc413-2024
Vicus
Exploiting local structures to improve network-based analysis of biological dataLove Open Source and this site? Check out how you can help us