blahah/phd

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Created about 9 years ago
Updated over 7 years ago

blahah/phd

blahah

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My phd thesis (WIP)

yunodb

A portable, persistent, electron-embeddable fulltext search + document store database for node.js

transrate

Understand your transcriptome assembly

datastructures

A collection of data structures in Ruby for my data structures challenge

pdf-narcissist

Hide a PDF inside a thumbnail of its own first page

assemblotron

Automated optimisation of de-novo transcriptome assembly

electron-renderify

Browserify transform to allow bundling for Electron renderer processes

biopsy

Biopsy - the Bioinformatic Optimisation System

choo-asyncify

make choo's events non-blocking ... 🚋 ...

better-blast

An evolving prototype experimenting with some ways to improve on BLAST. If it works, we'll engineer an industrial-strength suite.

ralink_RT5370_linux_driver

ralink RT5370 linux driver fixed to compile with v3+ kernel

slidewinder

This repo has moved to the slidewinder organisation

bindeps

Binary dependency management for Ruby

chain

bioinformatic pipelines with minimal effort

mozilla_science_fellowship_application

My application to the Mozilla Science Fellowship, 2015

etherpad-archive

Archive your etherpads!

java-download

Node module to download a particular Java package (JVM / JDK) from Oracle

choo-kanye

kanye (w)rapper for choo - easily add keyboard shortcuts to your choo app 🚂🚋🚋 + 🚋🎶🎤

mozilla_science_fellowship

Keeping track of my work during my Mozilla Science Lab Fellowship

transrate-paper

Paper for transrate

installing-node-tools

Cross-platform node tool installation instructions to be linked from READMEs/documentation

array-split-stream

a nodeJS transform stream that splits arrays

beau-selector

Run XPath or CSS selectors on arbitrary X(HT)ML documents in the command-line

bioruby-blast

A wrapper for BLAST+ to make it an easy dependency for gems

hyperdrive-binary-search

Binary search for entries in a hyperdrive archive by name

transrate-viewer

experiments in d3.js for viewing transrate results

orb14_bestpractice

Sketch of a community site for best-practise data processing and reporting in bioinformatics

vercel-headless-scraper-api

Examples of using vercel workers to turn any website into an API

solvers-gene-motifs

Solvers.io project to predict gene expression from motif combinations in promoters

meteor-pagedown-bootstrap

Meteor smart package for pagedown-bootstrap

dexperimentr

Differential expression experiment workflows

EBSeq

clone of EBSeq from bioconductor - beware experimental features

dreamcatcher

use nightmare.js to automate tricky download / scraping scenarios

fs-readstream-progress

fs.createReadStream wrapper that emits progress events. Also works with hyperdrive.

graphsample

Subsample FASTQ by sampling connected components of a de-Bruijn graph

lorem-ipsum-dom

Returns a div containing the full 4500 words of Lorem Ipsum, in paragraphs

TGAC-2014-genome-annotation

Course materials for the genome annotation part of the TGAC SeqAhead course 2014