bittremieux/jqcML

This repository has been archived on 19/Aug/2022
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Java
License
Apache License 2.0
Created almost 8 years ago
Updated almost 8 years ago

bittremieux/jqcML

bittremieux

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Java API for the standard qcML file format for mass spectrometry quality control data.

spectrum_utils

Python package for efficient mass spectrometry data processing and visualization

ANN-SoLo

Spectral library searching using approximate nearest neighbor techniques.

Jupyter Notebook

falcon

Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.

GLEAMS

GLEAMS is a Learned Embedding for Annotating Mass Spectra.

TCR-Classifier

Classifier to determine CD8+ T-cell receptor characteristics underlying peptide recognition.

Jupyter Notebook

cosine_neutral_loss

Jupyter Notebook

komidabot

A Slack chat bot to request the daily menu at the komida restaurants of the University of Antwerp.

gnps_suspect_library

Nearest neighbor suspect spectral library for untargeted metabolomics.

Jupyter Notebook

drugs_epidermis

Jupyter Notebook

feedly-unread

Userscript to place the Feedly unread count in the favicon and title bar

qc_analysis

Workflow to analyze the quality of mass spectrometry proteomics experiments based on multivariate quality control metrics.

ypic_challenge_2018

YPIC challenge 2018 data analysis

Jupyter Notebook

GLEAMS_notebooks

GLEAMS is a Learned Embedding for Annotating Mass Spectra.

Jupyter Notebook

sars_cov_2

Computational analysis of SARS-CoV-2 virus-host protein-protein interactions

Jupyter Notebook

review_proteomics_id_2023_jpr

crocosphaera_watsonii_wh_8501

Jupyter Notebook

smart-lab

Environment monitoring for mass spectrometry quality control: Towards the smart lab

Jupyter Notebook

proteomics_data_mining_challenge

Jupyter Notebook

pymzqc

falcon_notebooks

Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.

Jupyter Notebook

pharmaceuticals_exposure

Jupyter Notebook

GNPS_GC

Jupyter Notebook

emp500

Jupyter Notebook

suspects_inspection

cv

systemwide_ms

Jupyter Notebook

foodomics

Jupyter Notebook

iMonDB

Tool suite to automatically extract, store, manage, and visualize mass spectrometer instrument parameters from raw data files.

qc_tools_review

Classifier to evaluate the performance of various types of quality information in discriminating low-quality from high-quality experiments.