bionanoimaging/Image-Processing-In-Microscopy-2022-2023

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bionanoimaging/Image-Processing-In-Microscopy-2022-2023

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FourierTools.jl

Tools for working with Fourier space.

Scalable-Angular-Spectrum-Method-SAS

Implementations of the Scalable Angular Spectrum Method

Jupyter Notebook

TiledViews.jl

Allows an AbstractArray, to look like an AbstractArray with one more dimension and the tiles are represented along this dimension.

Beamerscope_MATLAB

This is a repository for a 3D printed DIY microscope with a structured illumination using a LED video-projector and an Android Cellphone. This is the MATLAB Code to create a machine learning dataset from phasecontrast images and its corresponding optimized illumination sources.

Image-Processing-In-Microscopy-2021-2022

Course material for "Image Processing in Microscopy" at the Friedrich Schiller University in Jena in the winter term 2021/22

IndexFunArrays.jl

Fun with indices (and functions on them)

SeparableFunctions.jl

Calculates multidimensional functions faster by exploiting their separability.

Introduction_Image_Processing_Julia

Material for 6th NORMIC Image Processing Workshop

cellSTORM-Tensorflow

Image-to-Image network to localize dSTORM events in Tensorflow. Publication link: https://arxiv.org/abs/1804.06244

NDTools.jl

A lightweight package for utility functions for working with multi-dimensional data

View5D

An image viewer for up to 5-dim data www.nanoimaging.de/View5D

bionanoimaging.github.io

Repository for hosting the website files

cellSTORM-ANDROID

Application to readout BW-frames from HUAWEI derived from Camera2RAW and FreedCAM

PSFToolbox-Matlab

Includes various ways to calculate point spread functions (PSFs) with a focus on high NA fluorescence microscopy.

Beamerscope-ANDROID

Beamerscope-ANDROID

cellSTORM-pyTorch

Code to train the image enhancement for the cellSTORM approach

cellSTORM-MATLAB

Code to generate datasets for the cellSTORM approach

Tensorflow_MultipleScattering

Repo to compare different single/multiple scattering algorithms computationally.

matlab_tools

cellSTORM_TENSORFLOW

This is the APP to localize dSTORM experiments using an Android cellphone and an image-to-image GAN

PSFDistiller.jl

Distills a point spread function (PSF) from a measurement of beads by selecting local maxima that are separate enough from other ones.

cameracalibration

This is a Napari Plugin that calibrates your camera w.r.t. readnoise and gain

Beamerscope_TENSORFLOW

This creates a Tensorflow Graph for the automaized illumination detection.

Beamerscope_CAD

Learn to illuminate with an optimized light-source shape. This is the CAD Repository for the projector based cellphone microscope which is benefitting from the light source.

NanoImagingPack

Python pack for nanoimaging-related tasks