bioinfo-ut/AluMine

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Perl
License
GNU General Publi...
Created almost 6 years ago
Updated almost 4 years ago

bioinfo-ut/AluMine

bioinfo-ut

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Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

PlasmidSeeker

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

GenomeTester4

A toolkit for performing set operations - union, intersection and complement - on k-mer lists.

PhenotypeSeeker

Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains

GeneToCN

Gene copy number prediction from k-mer frequencies

PlantTaxSeeker

A pipeline to indentify taxon-specific k-mers in plant genomes

StrainSeeker

A bacterial identification program for fast identification of bacterial strains from raw sequencing reads

cRegions

primer3_masker

A sequence masking tool, both Primer3 integrated and standalone variants