Discover bio-ontology-research-group/phenomenet-vp Open Source project

Function prediction using a deep ontology-aware classifier

105

deepgo

ontology-tutorial

Ontology Tutorial

DeepGO with GOPlus axioms

deepgoplus

mOWL: Machine Learning library with Ontologies

mowl

Feature learning over RDF data and OWL ontologies

walking-rdf-and-owl

Turning Ontologies Plus Annotation Properties into Vectors

opa2vec

Method for drug repurposing from knowledge graphs and literature

multi-drug-embedding

Embeddings for ontologies in the Description Logic EL++

el-embeddings

Representation learning for ontologies and their annotations

onto2vec

Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.

DL2Vec

An ontology of units of measurements

unit-ontology

Makefile

deepgozero

DeepGO with Fuzzy DL

SPARQL Endpoint with functions for computing embedding similarities

vec2sparql

Java

DeepSVP

Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity

SmuDGE: Semantic Disease Gene Embeddings

SMUDGE

Generating graph structures from OWL ontologies

Onto2Graph

Source code for the DeepViral paper

DeepViral

Ontology repository that provides Reasoning as as Service

AberOWL

Graph Neural Network model for survival analysis from multi-omics data

DeepMOCCA

Web application and additional content for PathoPhenoDB

pathophenodb

AberOWL Ontology Repository

aberowl-orepo

deeppheno

Generate interpretable rules from knowledge bases

interpretable-learning

mowl-tutorial

Ontology-based prediction of cancer driver genes

padimi

predCAN

Ontology Alignment Evaluation Initiative 2016 Campaign

OAEI2016

Web Ontology Language

neural-network-plant-trait-classification

Fine-grained trait classification using deep convolutional neural networks

aberowlweb

Method to predict phenotypes from functions

phenogocon

Combining lexical and context features for automatic ontology extension

ontology-extension

this repository contains text mined gene-phenotype data

genepheno

Perl

UNMIREOT

Tools to identify, diagnose, and semi-automatically repair hidden contradictions in biomedical ontologies

Model organism phenotypes contribution in predicting gene disease associations

ai-biomed-summer-school

TeX

mo-phenotype-analysis

A dictionary-based Named Entitiy Recognition tool

whatizit

Java

BORD

Install script and sub-directories for AberOWL

aberowl-meta

phenomeweb

icdpheno

Sparql2OWL

EL2Box_embedding

ddimech

foodontology

pgsim

Similarity mesure analysis

Information the the tutorial on phenotypes

ontology-and-phenotype-tutorial

TeX

DDIEM

pmcanalysis

Task Specific Ontology Evaluation

tsoe

deepgoweb

The scripts to reproduce the analysis of the HPI prediction paper

hpi-predict

semantic-haiku

metabolitenet

Category-theoretic representation of ALC theories

catE

Source for PhenomeNET and related projects

semkernel

Java

Random-walk-with-edge-stratification

C++

phenomeblast