bio-ontology-research-group/Random-walk-with-edge-stratification

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bio-ontology-research-group/Random-walk-with-edge-stratification

bio-ontology-research-group

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machine-learning-with-ontologies

Jupyter Notebook

deepgo

Function prediction using a deep ontology-aware classifier

ontology-tutorial

Ontology Tutorial

Jupyter Notebook

deepgoplus

DeepGO with GOPlus axioms

mowl

mOWL: Machine Learning library with Ontologies

walking-rdf-and-owl

Feature learning over RDF data and OWL ontologies

phenomenet-vp

A phenotype-based tool for variant prioritization in WES and WGS data

opa2vec

Turning Ontologies Plus Annotation Properties into Vectors

multi-drug-embedding

Method for drug repurposing from knowledge graphs and literature

el-embeddings

Embeddings for ontologies in the Description Logic EL++

onto2vec

Representation learning for ontologies and their annotations

DL2Vec

Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.

unit-ontology

An ontology of units of measurements

deepgozero

DeepGO with Fuzzy DL

vec2sparql

SPARQL Endpoint with functions for computing embedding similarities

DeepSVP

Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity

SMUDGE

SmuDGE: Semantic Disease Gene Embeddings

Onto2Graph

Generating graph structures from OWL ontologies

DeepViral

Source code for the DeepViral paper

AberOWL

Ontology repository that provides Reasoning as as Service

DeepMOCCA

Graph Neural Network model for survival analysis from multi-omics data

Jupyter Notebook

pathophenodb

Web application and additional content for PathoPhenoDB

aberowl-orepo

AberOWL Ontology Repository

deeppheno

interpretable-learning

Generate interpretable rules from knowledge bases

mowl-tutorial

Jupyter Notebook

padimi

predCAN

Ontology-based prediction of cancer driver genes

OAEI2016

Ontology Alignment Evaluation Initiative 2016 Campaign

Web Ontology Language

neural-network-plant-trait-classification

Fine-grained trait classification using deep convolutional neural networks

aberowlweb

phenogocon

Method to predict phenotypes from functions

ontology-extension

Combining lexical and context features for automatic ontology extension

genepheno

this repository contains text mined gene-phenotype data

UNMIREOT

Tools to identify, diagnose, and semi-automatically repair hidden contradictions in biomedical ontologies

ai-biomed-summer-school

mo-phenotype-analysis

Model organism phenotypes contribution in predicting gene disease associations

whatizit

A dictionary-based Named Entitiy Recognition tool

BORD

aberowl-meta

Install script and sub-directories for AberOWL

phenomeweb

icdpheno

Sparql2OWL

EL2Box_embedding

ddimech

foodontology

pgsim

Similarity mesure analysis

ontology-and-phenotype-tutorial

Information the the tutorial on phenotypes

DDIEM

pmcanalysis

tsoe

Task Specific Ontology Evaluation

deepgoweb

hpi-predict

The scripts to reproduce the analysis of the HPI prediction paper

Jupyter Notebook

semantic-haiku

metabolitenet

Jupyter Notebook

catE

Category-theoretic representation of ALC theories

semkernel

phenomeblast

Source for PhenomeNET and related projects

similarityonMGI

this repsoitory contanst data ns scripts to evaluate similarity between gene-phenotypes and disease phenotypes on the MGI gene-disease datasets