Discover bio-ontology-research-group/Onto2Graph Open Source project

Function prediction using a deep ontology-aware classifier

105

deepgo

ontology-tutorial

Ontology Tutorial

DeepGO with GOPlus axioms

deepgoplus

mOWL: Machine Learning library with Ontologies

mowl

Feature learning over RDF data and OWL ontologies

walking-rdf-and-owl

A phenotype-based tool for variant prioritization in WES and WGS data

phenomenet-vp

Turning Ontologies Plus Annotation Properties into Vectors

opa2vec

Method for drug repurposing from knowledge graphs and literature

multi-drug-embedding

Embeddings for ontologies in the Description Logic EL++

el-embeddings

Representation learning for ontologies and their annotations

onto2vec

Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.

DL2Vec

An ontology of units of measurements

unit-ontology

Makefile

deepgozero

DeepGO with Fuzzy DL

SPARQL Endpoint with functions for computing embedding similarities

vec2sparql

Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity

DeepSVP

SmuDGE: Semantic Disease Gene Embeddings

SMUDGE

Source code for the DeepViral paper

DeepViral

Ontology repository that provides Reasoning as as Service

AberOWL

Graph Neural Network model for survival analysis from multi-omics data

DeepMOCCA

Web application and additional content for PathoPhenoDB

pathophenodb

AberOWL Ontology Repository

aberowl-orepo

JavaScript

deeppheno

Generate interpretable rules from knowledge bases

interpretable-learning

mowl-tutorial

Ontology-based prediction of cancer driver genes

padimi

predCAN

Ontology Alignment Evaluation Initiative 2016 Campaign

OAEI2016

Web Ontology Language

neural-network-plant-trait-classification

Fine-grained trait classification using deep convolutional neural networks

Method to predict phenotypes from functions

aberowlweb

JavaScript

phenogocon

Combining lexical and context features for automatic ontology extension

ontology-extension

this repository contains text mined gene-phenotype data

genepheno

Perl

UNMIREOT

Tools to identify, diagnose, and semi-automatically repair hidden contradictions in biomedical ontologies

Model organism phenotypes contribution in predicting gene disease associations

ai-biomed-summer-school

TeX

mo-phenotype-analysis

A dictionary-based Named Entitiy Recognition tool

whatizit

BORD

Install script and sub-directories for AberOWL

aberowl-meta

phenomeweb

icdpheno

Sparql2OWL

EL2Box_embedding

ddimech

foodontology

pgsim

Similarity mesure analysis

Information the the tutorial on phenotypes

ontology-and-phenotype-tutorial

TeX

DDIEM

pmcanalysis

Task Specific Ontology Evaluation

tsoe

deepgoweb

JavaScript

hpi-predict

The scripts to reproduce the analysis of the HPI prediction paper

semantic-haiku

metabolitenet

Category-theoretic representation of ALC theories

catE

semkernel

Source for PhenomeNET and related projects

Random-walk-with-edge-stratification

C++

phenomeblast