bigdatagenomics/bdg-services bigdatagenomics/bdg-services

  • Stars
    star
    5
  • Rank 2,861,937 (Top 57 %)
  • Language
    Java
  • License
    Apache License 2.0
  • Created over 10 years ago
  • Updated about 10 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
bigdatagenomics/bdg-services
github

bigdatagenomics

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.

More Repositories

1

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Scala
1,000
star
2

mango

A scalable genome browser. Apache 2 licensed.
Scala
124
star
3

avocado

A Variant Caller, Distributed. Apache 2 licensed.
Scala
71
star
4

bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Shell
38
star
5

cannoli

Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
Scala
38
star
6

eggo

Ready-to-go Parquet-formatted public 'omics datasets
Python
30
star
7

rice

An RNA pipeline built on top of ADAM. Apache 2 licensed.
Scala
19
star
8

utils

General utility code used across BDG products. Apache 2 licensed.
Scala
18
star
9

awesome-adam

Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.
11
star
10

bigdatagenomics.github.io

Web Site for the Big Data Genomics Group
HTML
10
star
11

gnocchi

Scala
6
star
12

workflows

Toil workflows for bigdatagenomics tools. Apache 2 licensed.
Python
5
star
13

lime

Distributed Set Theory for Genomics
Scala
5
star
14

recipes

Recipes using BDG projects. Apache 2 licensed.
Shell
4
star
15

PacMin

Assembler for PacBio reads. Apache 2 licensed.
Scala
3
star
16

quinine

A refreshing treatment for all quality control ailments. Apache 2 licensed.
Scala
2
star
17

jenkins-docker

Dockerfile
1
star
18

toil-wdl-api

Exemplar API that mediates Toil with a WDL front-end and workflow tracking.
Java
1
star