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MRtrix3_connectome
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.freesurfer
BIDS app wrapping recon-all from FreeSurferHCPPipelines
A BIDS App for minimal preprocessing using the HCP PipelinesrsHRF
Resting state HRF estimation from BOLD-fMRI signalexample
This an example app that can serve as a template.CPAC
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)hyperalignment
Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.dockerfile-templates
Dockerfile templates commonly used in BIDS AppsBrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.baracus
Predicts brain age, based on data from Freesurfer 5.3PyMVPA
runs MVPA and RSA analysis BIDS bold derivative datars_signal_extract
BIDS App for resting state signal extraction using nilearn.BROCCOLI
BIDS App for BROCCOLInipypelines
Preprocess functional tasks in a BIDS dataset.ndmg
BIDS app for NeuroData's MRI to Graphs pipelineQAP
PCP Quality Assessment Protocoloppni
runs fast optimization of preprocessing pipelines for BOLD fMRIfmriprep
This repository has moved to https://github.com/poldracklab/fmriprepniak
Pipeline for preprocessing of fMRI and structural MRI scansmindboggle
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image datagiga_connectome
generate connectome from fMRIPrep outputsbids-apps.github.io
Portable neuroimaging pipelines that understand BIDS datasetstracula
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.DPARSF
Docker version of DPARSF, also deployed at OpenNeuro.orgbase_fsl
MAGeTbrain
matlab-compiler-runtime
Base image with Matlab Compiler Runtime (MCR)afni_proc
prototype AFNI bids app implmenting participant level preprocessing with afni_proc.pyFibreDensityAndCrosssection
SyntheticDiffusion
brainiak-srm
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAKLove Open Source and this site? Check out how you can help us