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MRtrix3_connectome
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.freesurfer
BIDS app wrapping recon-all from FreeSurferHCPPipelines
A BIDS App for minimal preprocessing using the HCP PipelinesrsHRF
Resting state HRF estimation from BOLD-fMRI signalexample
This an example app that can serve as a template.CPAC
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)SPM
BIDS App containing an instance of the SPM software.hyperalignment
Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.dockerfile-templates
Dockerfile templates commonly used in BIDS AppsBrainSuite
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.baracus
Predicts brain age, based on data from Freesurfer 5.3rs_signal_extract
BIDS App for resting state signal extraction using nilearn.BROCCOLI
BIDS App for BROCCOLInipypelines
Preprocess functional tasks in a BIDS dataset.ndmg
BIDS app for NeuroData's MRI to Graphs pipelineQAP
PCP Quality Assessment Protocoloppni
runs fast optimization of preprocessing pipelines for BOLD fMRIfmriprep
This repository has moved to https://github.com/poldracklab/fmriprepniak
Pipeline for preprocessing of fMRI and structural MRI scansmindboggle
Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image datagiga_connectome
generate connectome from fMRIPrep outputsbids-apps.github.io
Portable neuroimaging pipelines that understand BIDS datasetstracula
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.DPARSF
Docker version of DPARSF, also deployed at OpenNeuro.orgbase_fsl
MAGeTbrain
matlab-compiler-runtime
Base image with Matlab Compiler Runtime (MCR)afni_proc
prototype AFNI bids app implmenting participant level preprocessing with afni_proc.pyFibreDensityAndCrosssection
SyntheticDiffusion
brainiak-srm
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAKLove Open Source and this site? Check out how you can help us